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The RCSB protein data bank: Redesigned web site and web services

Academic Article
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Overview

authors

  • Rose, P. W.
  • Beran, B.
  • Bi, C. X.
  • Bluhm, W. F.
  • Dimitropoulos, D.
  • Goodsell, David
  • Prlic, A.
  • Quesada, M.
  • Quinn, G. B.
  • Westbrook, J. D.
  • Young, J.
  • Yukich, B.
  • Zardecki, C.
  • Berman, H. M.
  • Bourne, P. E.

publication date

  • January 2011

journal

  • Nucleic Acids Research  Journal

abstract

  • The RCSB Protein Data Bank (RCSB PDB) web site (http://www.pdb.org) has been redesigned to increase usability and to cater to a larger and more diverse user base. This article describes key enhancements and new features that fall into the following categories: (i) query and analysis tools for chemical structure searching, query refinement, tabulation and export of query results; (ii) web site customization and new structure alerts; (iii) pair-wise and representative protein structure alignments; (iv) visualization of large assemblies; (v) integration of structural data with the open access literature and binding affinity data; and (vi) web services and web widgets to facilitate integration of PDB data and tools with other resources. These improvements enable a range of new possibilities to analyze and understand structure data. The next generation of the RCSB PDB web site, as described here, provides a rich resource for research and education.

subject areas

  • Animals
  • Computer Graphics
  • Databases, Protein
  • Humans
  • Internet
  • Ligands
  • Mice
  • Protein Conformation
  • Proteins
  • Systems Integration
  • User-Computer Interface
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Identity

PubMed Central ID

  • PMC3013649

International Standard Serial Number (ISSN)

  • 0305-1048

Digital Object Identifier (DOI)

  • 10.1093/nar/gkq1021

PubMed ID

  • 21036868
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Additional Document Info

start page

  • D392

end page

  • D401

volume

  • 39

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