recent publications

• academic article

  • Fuhs, S. R., Meisenhelder, J., Aslanian, A., Ma, L., Zagorska, A., Stankova, M., Binnie, A., Al-Obeidi, F., Mauger, J., Lemke, G., Yates III, J. R., Hunter, T. Monoclonal 1-and 3-phosphohistidine antibodies: New tools to study histidine phosphorylation Cell  2015 162:198-210  DOI:10.1016/j.cell.2015.05.046  PMID:26140597  PMCID:PMC4491144
  • Wang, J., Han, X., Wong, C. C., Cheng, H., Aslanian, A., Xu, T., Leavis, P., Roder, H., Hedstrom, L., Yates III, J. R., Kashina, A. Arginyltransferase ATE1 catalyzes midchain arginylation of proteins at side chain carboxylates in vivo Chemistry & Biology  2014 21:331-337  DOI:10.1016/j.chembiol.2013.12.017  PMID:24529990  PMCID:PMC4010198
  • Voog, J., Sandall, S. L., Hime, G. R., Resende, L. P. F., Loza-Coll, M., Aslanian, A., Yates III, J. R., Hunter, T., Fuller, M. T., Jones, L. Escargot restricts niche cell to stem cell conversion in the Drosophila testis Cell Reports  2014 7:722-734  DOI:10.1016/j.celrep.2014.04.025  PMID:24794442  PMCID:PMC4128242
  • Han, X., Wang, Y., Aslanian, A., Fonslow, B., Graczyk, B., Davis, T. N., Yates III, J. R. In-line separation by capillary electrophoresis prior to analysis by top-down mass spectrometry enables sensitive characterization of protein complexes Journal of Proteome Research  2014 13:6078-6086  DOI:10.1021/pr500971h  PMID:25382489  PMCID:PMC4262260
  • Aslanian, A., Yates III, J. R., Hunter, T. Mass spectrometry-based quantification of the cellular response to methyl methanesulfonate treatment in human cells DNA Repair  2014 15:29-38  DOI:10.1016/j.dnarep.2013.12.007  PMID:24461736  PMCID:PMC4046014
  • Ma, H., Han, B. K., Guaderrama, M., Aslanian, A., Yates III, J. R., Hunter, T., Wittenberg, C. Psy2 targets the PP4 family phosphatase Pph3 to dephosphorylate Mth1 and repress glucose transporter gene expression Molecular and Cellular Biology  2014 34:452-463  DOI:10.1128/mcb.00279-13  PMID:24277933  PMCID:PMC3911506
  • Han, X., Wang, Y., Aslanian, A., Bern, M., Lavallee-Adam, M., Yates III, J. R. Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale Analytical Chemistry  2014 86:11006-11012  DOI:10.1021/ac503439n  PMID:25346219  PMCID:PMC4238646
  • Samson, M., Jow, M. M., Wong, C. C. L., Fitzpatrick, C., Aslanian, A., Saucedo, I., Estrada, R., Ito, T., Park, S. K. R., Yates III, J. R., Chu, D. S. The specification and global reprogramming of histone epigenetic marks during gamete formation and early embryo development in C. elegans PLoS Genetics  2014 10  DOI:10.1371/journal.pgen.1004588  PMID:25299455  PMCID:PMC4191889
  • Zheng, H., Seit-Nebi, A., Han, X., Aslanian, A., Tat, J., Liao, R., Yates, J. R., 3rd, Sun, P. A posttranslational modification cascade involving p38, Tip60, and PRAK mediates oncogene-induced senescence Molecular Cell  2013 50:699-710  DOI:10.1016/j.molcel.2013.04.013  PMID:23685072  PMCID:PMC3679363
  • Travesa, A., Kuo, D., de Bruin, R. A. M., Kalashnikova, T. I., Guaderrama, M., Thai, K., Aslanian, A., Smolka, M. B., Yates, J. R., Ideker, T., Wittenberg, C. DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1 EMBO Journal  2012 31:1811-1822  DOI:10.1038/emboj.2012.28  PMID:22333915  PMCID:PMC3321207
  • Nie, M. H., Aslanian, A., Prudden, J., Heideker, J., Vashisht, A. A., Wohlschlegel, J. A., Yates, J. R., Boddy, M. N. Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions Journal of Biological Chemistry  2012 287:29610-29619  DOI:10.1074/jbc.M112.379768  PMID:22730331  PMCID:PMC3436128
  • Lu, C. S., Truong, L. N., Aslanian, A., Shi, L. Z., Li, Y., Hwang, P. Y. H., Koh, K. H., Hunter, T., Yates, J. R., Berns, M. W., Wu, X. The RING finger protein RNF8 ubiquitinates Nbs1 to promote DNA double-strand break repair by homologous recombination Journal of Biological Chemistry  2012 287:43984-43994  DOI:10.1074/jbc.M112.421545  PMID:23115235  PMCID:PMC3527981
  • Chaurushiya, M. S., Lilley, C. E., Aslanian, A., Meisenhelder, J., Scott, D. C., Landry, S., Ticau, S., Boutell, C., Yates III, J. R., Schulman, B. A., Hunter, T., Weitzman, M. D. Viral E3 ubiquitin ligase-mediated degradation of a cellular E3: viral mimicry of a cellular phosphorylation mark targets the RNF8 FHA domain Molecular Cell  2012 46:79-90  DOI:10.1016/j.molcel.2012.02.004  PMID:22405594  PMCID:PMC3648639
  • Englert, M., Sheppard, K., Aslanian, A., Yates, J. R., Soll, D. Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation Proceedings of the National Academy of Sciences of the United States of America  2011 108:1290-1295  DOI:10.1073/pnas.1018307108  PMID:21209330  PMCID:PMC3029724
  • Saddic, L. A., West, L. E., Aslanian, A., Yates, J. R., Rubin, S. M., Gozani, O., Sage, J. Methylation of the retinoblastoma tumor suppressor by SMYD2 Journal of Biological Chemistry  2010 285:37733-37740  DOI:10.1074/jbc.M110.137612  PMID:20870719  PMCID:PMC2988378
  • Dovey, C. L., Aslanian, A., Sofueva, S., Yates, J. R., Russell, P. Mms1-Mms22 complex protects genome integrity in Schizosaccharomyces pombe DNA Repair  2009 8:1390-1399  DOI:10.1016/j.dnarep.2009.09.008  PMID:19819763  PMCID:PMC2787726
  • Kaeser, M. D., Aslanian, A., Dong, M. Q., Yates, J. R., Emerson, B. M. BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells Journal of Biological Chemistry  2008 283:32254-32263  DOI:10.1074/jbc.M806061200  PMID:18809673  PMCID:PMC2583284
  • de Bruin, R. A. M., Kalashnikova, T. I., Aslanian, A., Wohischlegel, J., Chahwan, C., Yates, J. R., Russell, P., Wittenberg, C. DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1 Proceedings of the National Academy of Sciences of the United States of America  2008 105:11230-11235  DOI:10.1073/pnas.0801106105  PMID:18682565  PMCID:PMC2516226
  • Han, X. M., Aslanian, A., Yates, J. R. Mass spectrometry for proteomics Current Opinion in Chemical Biology  2008 12:483-490  DOI:10.1016/j.cbpa.2008.07.024  PMID:18718552  PMCID:PMC2642903
  • Baudino, T. A., Maclean, K. H., Brennan, J., Parganas, E., Yang, C. Y., Aslanian, A., Lees, J. A., Sherr, C. J., Roussel, M. F., Cleveland, J. L. Myc-mediated proliferation and lymphomagenesis, but not apoptosis, are compromised by e2f1 loss Molecular Cell  2003 11:905-914  DOI:10.1016/s1097-2765(03)00102-3  PMID:12718877