recent publications
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academic article
- Fuhs, S. R., Meisenhelder, J., Aslanian, A., Ma, L., Zagorska, A., Stankova, M., Binnie, A., Al-Obeidi, F., Mauger, J., Lemke, G., Yates III, J. R., Hunter, T. Monoclonal 1-and 3-phosphohistidine antibodies: New tools to study histidine phosphorylation Cell 2015 162:198-210 DOI:10.1016/j.cell.2015.05.046 PMID:26140597 PMCID:PMC4491144
- Han, X., Wang, Y., Aslanian, A., Fonslow, B., Graczyk, B., Davis, T. N., Yates III, J. R. In-line separation by capillary electrophoresis prior to analysis by top-down mass spectrometry enables sensitive characterization of protein complexes Journal of Proteome Research 2014 13:6078-6086 DOI:10.1021/pr500971h PMID:25382489 PMCID:PMC4262260
- Han, X., Wang, Y., Aslanian, A., Bern, M., Lavallee-Adam, M., Yates III, J. R. Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale Analytical Chemistry 2014 86:11006-11012 DOI:10.1021/ac503439n PMID:25346219 PMCID:PMC4238646
- Samson, M., Jow, M. M., Wong, C. C. L., Fitzpatrick, C., Aslanian, A., Saucedo, I., Estrada, R., Ito, T., Park, S. K. R., Yates III, J. R., Chu, D. S. The specification and global reprogramming of histone epigenetic marks during gamete formation and early embryo development in C. elegans PLoS Genetics 2014 10 DOI:10.1371/journal.pgen.1004588 PMID:25299455 PMCID:PMC4191889
- Voog, J., Sandall, S. L., Hime, G. R., Resende, L. P. F., Loza-Coll, M., Aslanian, A., Yates III, J. R., Hunter, T., Fuller, M. T., Jones, L. Escargot restricts niche cell to stem cell conversion in the Drosophila testis Cell Reports 2014 7:722-734 DOI:10.1016/j.celrep.2014.04.025 PMID:24794442 PMCID:PMC4128242
- Wang, J., Han, X., Wong, C. C., Cheng, H., Aslanian, A., Xu, T., Leavis, P., Roder, H., Hedstrom, L., Yates III, J. R., Kashina, A. Arginyltransferase ATE1 catalyzes midchain arginylation of proteins at side chain carboxylates in vivo Chemistry & Biology 2014 21:331-337 DOI:10.1016/j.chembiol.2013.12.017 PMID:24529990 PMCID:PMC4010198
- Aslanian, A., Yates III, J. R., Hunter, T. Mass spectrometry-based quantification of the cellular response to methyl methanesulfonate treatment in human cells DNA Repair 2014 15:29-38 DOI:10.1016/j.dnarep.2013.12.007 PMID:24461736 PMCID:PMC4046014
- Ma, H., Han, B. K., Guaderrama, M., Aslanian, A., Yates III, J. R., Hunter, T., Wittenberg, C. Psy2 targets the PP4 family phosphatase Pph3 to dephosphorylate Mth1 and repress glucose transporter gene expression Molecular and Cellular Biology 2014 34:452-463 DOI:10.1128/mcb.00279-13 PMID:24277933 PMCID:PMC3911506
- Zheng, H., Seit-Nebi, A., Han, X., Aslanian, A., Tat, J., Liao, R., Yates, J. R., 3rd, Sun, P. A posttranslational modification cascade involving p38, Tip60, and PRAK mediates oncogene-induced senescence Molecular Cell 2013 50:699-710 DOI:10.1016/j.molcel.2013.04.013 PMID:23685072 PMCID:PMC3679363
- Lu, C. S., Truong, L. N., Aslanian, A., Shi, L. Z., Li, Y., Hwang, P. Y. H., Koh, K. H., Hunter, T., Yates, J. R., Berns, M. W., Wu, X. The RING finger protein RNF8 ubiquitinates Nbs1 to promote DNA double-strand break repair by homologous recombination Journal of Biological Chemistry 2012 287:43984-43994 DOI:10.1074/jbc.M112.421545 PMID:23115235 PMCID:PMC3527981
- Nie, M. H., Aslanian, A., Prudden, J., Heideker, J., Vashisht, A. A., Wohlschlegel, J. A., Yates, J. R., Boddy, M. N. Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions Journal of Biological Chemistry 2012 287:29610-29619 DOI:10.1074/jbc.M112.379768 PMID:22730331 PMCID:PMC3436128
- Chaurushiya, M. S., Lilley, C. E., Aslanian, A., Meisenhelder, J., Scott, D. C., Landry, S., Ticau, S., Boutell, C., Yates III, J. R., Schulman, B. A., Hunter, T., Weitzman, M. D. Viral E3 ubiquitin ligase-mediated degradation of a cellular E3: viral mimicry of a cellular phosphorylation mark targets the RNF8 FHA domain Molecular Cell 2012 46:79-90 DOI:10.1016/j.molcel.2012.02.004 PMID:22405594 PMCID:PMC3648639
- Travesa, A., Kuo, D., de Bruin, R. A. M., Kalashnikova, T. I., Guaderrama, M., Thai, K., Aslanian, A., Smolka, M. B., Yates, J. R., Ideker, T., Wittenberg, C. DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1 EMBO Journal 2012 31:1811-1822 DOI:10.1038/emboj.2012.28 PMID:22333915 PMCID:PMC3321207
- Englert, M., Sheppard, K., Aslanian, A., Yates, J. R., Soll, D. Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation Proceedings of the National Academy of Sciences of the United States of America 2011 108:1290-1295 DOI:10.1073/pnas.1018307108 PMID:21209330 PMCID:PMC3029724
- Saddic, L. A., West, L. E., Aslanian, A., Yates, J. R., Rubin, S. M., Gozani, O., Sage, J. Methylation of the retinoblastoma tumor suppressor by SMYD2 Journal of Biological Chemistry 2010 285:37733-37740 DOI:10.1074/jbc.M110.137612 PMID:20870719 PMCID:PMC2988378
- Dovey, C. L., Aslanian, A., Sofueva, S., Yates, J. R., Russell, P. Mms1-Mms22 complex protects genome integrity in Schizosaccharomyces pombe DNA Repair 2009 8:1390-1399 DOI:10.1016/j.dnarep.2009.09.008 PMID:19819763 PMCID:PMC2787726
- Kaeser, M. D., Aslanian, A., Dong, M. Q., Yates, J. R., Emerson, B. M. BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells Journal of Biological Chemistry 2008 283:32254-32263 DOI:10.1074/jbc.M806061200 PMID:18809673 PMCID:PMC2583284
- Han, X. M., Aslanian, A., Yates, J. R. Mass spectrometry for proteomics Current Opinion in Chemical Biology 2008 12:483-490 DOI:10.1016/j.cbpa.2008.07.024 PMID:18718552 PMCID:PMC2642903
- de Bruin, R. A. M., Kalashnikova, T. I., Aslanian, A., Wohischlegel, J., Chahwan, C., Yates, J. R., Russell, P., Wittenberg, C. DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1 Proceedings of the National Academy of Sciences of the United States of America 2008 105:11230-11235 DOI:10.1073/pnas.0801106105 PMID:18682565 PMCID:PMC2516226
- Baudino, T. A., Maclean, K. H., Brennan, J., Parganas, E., Yang, C. Y., Aslanian, A., Lees, J. A., Sherr, C. J., Roussel, M. F., Cleveland, J. L. Myc-mediated proliferation and lymphomagenesis, but not apoptosis, are compromised by e2f1 loss Molecular Cell 2003 11:905-914 DOI:10.1016/s1097-2765(03)00102-3 PMID:12718877