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Gangavarapu, Karthik
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Gangavarapu, Karthik

Graduate Student
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Publications

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    • degree-related publication Deng, X. D., Gu, W., Federman, S., Du Plessis, L., Pybus, O. G., Faria, N. R., Wang, C., Yu, G. X., Bushnell, B., Pan, C. Y., Guevara, H., Sotomayor-Gonzalez, A., et al. Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California Science  2020 369:582-587  DOI:10.1126/science.abb9263  PMID:32513865  PMCID:PMC7286545
    • degree-related publication Sullivan, B. M., Sakabe, S., Hartnett, J. N., Ngo, N., Goba, A., Momoh, M., Sandi, J. D., Kanneh, L., Cubitt, B., Garcia, S. D., Ware, B. C., Kotliar, D., et al. High crossreactivity of human T cell responses between Lassa virus lineages PLoS Pathogens  2020 16  DOI:10.1371/journal.ppat.1008352; 10.1371/journal.ppat.1008352.r001; 10.1371/journal.ppat.1008352.r002; 10.1371/journal.ppat.1008352.r003; 10.1371/journal.ppat.1008352.r004  PMID:32142546  PMCID:PMC7080273
    • degree-related publication Grubaugh, N. D., Saraf, S., Gangavarapu, K., Watts, A., Tan, A. L., Oidtman, R. J., Ladner, J. T., Oliveira, G., Matteson, N. L., Kraemer, M. U. G., Vogels, C. B. F., Hentoff, A., et al. Travel surveillance and genomics uncover a hidden Zika outbreak during the waning epidemic Cell  2019 178:1057-1071  DOI:10.1016/j.cell.2019.07.018  PMID:31442400  PMCID:PMC6716374
    • degree-related publication Grubaugh, N. D., Gangavarapu, K., Quick, J., Matteson, N. L., De Jesus, J. G., Main, B. J., Tan, A. L., Paul, L. M., Brackney, D. E., Grewal, S., Gurfield, N., Van Rompay, K. K. A., et al. An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar Genome Biology  2019 20  DOI:10.1186/s13059-018-1618-7  PMID:30621750  PMCID:PMC6325816
    • degree-related publication Saphire, E. O., Schendel, S. L., Fusco, M. L., Gangavarapu, K., Gunn, B. M., Wec, A. Z., Halfmann, P. J., Brannan, J. M., Herbert, A. S., Qiu, X. G., Wagh, K., He, S., et al. Systematic analysis of monoclonal antibodies against Ebola virus GP defines features that contribute to protection Cell  2018 174:938-952  DOI:10.1016/j.cell.2018.07.033  PMID:30096313  PMCID:PMC6102396
    • degree-related publication Gunn, B. M., Yu, W. H., Karim, M. M., Brannan, J. M., Herbert, A. S., Wec, A. Z., Halfmann, P. J., Fusco, M. L., Schendel, S. L., Gangavarapu, K., Krause, T., Qiu, X., et al. A role for Fc function in therapeutic monoclonal antibody-mediated protection against Ebola virus Cell Host & Microbe  2018 24:221-233  DOI:10.1016/j.chom.2018.07.009  PMID:30092199
    • degree-related publication Sakabe, S., Sullivan, B. M., Hartnett, J. N., Robles-Sikisaka, R., Gangavarapu, K., Cubitt, B., Ware, B. C., Kotliar, D., Branco, L. M., Goba, A., Momoh, M., Sandi, J. D., et al. Analysis of CD8(+) T cell response during the 2013-2016 Ebola epidemic in West Africa Proceedings of the National Academy of Sciences of the United States of America  2018 115:E7578-E7586  DOI:10.1073/pnas.1806200115  PMID:30038008  PMCID:PMC6094108
    • degree-related publication Gardner, L. M., Bota, A., Gangavarapu, K., Kraemer, M. U. G., Grubaugh, N. D. Inferring the risk factors behind the geographical spread and transmission of Zika in the Americas PLoS Neglected Tropical Diseases  2018 12  DOI:10.1371/journal.pntd.0006194  PMID:29346387  PMCID:PMC5790294
    • degree-related publication Grubaugh, N. D., Ladner, J. T., Kraemer, M. U. G., Dudas, G., Tan, A. L., Gangavarapu, K., Wiley, M. R., White, S., Theze, J., Magnani, D. M., Prieto, K., Reyes, D., et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States Nature  2017 546:401-405  DOI:10.1038/nature22400  PMID:28538723
    • degree-related publication Metsky, H. C., Matranga, C. B., Wohl, S., Schaffner, S. F., Freije, C. A., Winnicki, S. M., West, K., Qu, J., Baniecki, M. L., Gladden-Young, A., Lin, A. E., Tomkins-Tinch, C. H., et al. Zika virus evolution and spread in the Americas Nature  2017 546:411-15  DOI:10.1038/nature22402  PMID:28538734
    • degree-related publication Quick, J., Grubaugh, N. D., Pullan, S. T., Claro, I. M., Smith, A. D., Gangavarapu, K., Oliveira, G., Robles-Sikisaka, R., Rogers, T. F., Beutler, N. A., Burton, D. R., Lewis-Ximenez, L. L., et al. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples Nature Protocols  2017 12:1261-1276  DOI:10.1038/nprot.2017.066  PMID:28538739
    • degree-related publication Griffith, M., Spies, N. C., Krysiak, K., McMichael, J. F., Coffman, A. C., Danos, A. M., Ainscough, B. J., Ramirez, C. A., Rieke, D. T., Kujan, L., Barnell, E. K., Wagner, A. H., et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer Nature Genetics  2017 49:170-174  DOI:10.1038/ng.3774  PMID:28138153
    • degree-related publication Ricciardi, M. J., Magnani, D. M., Grifoni, A., Kwon, Y. C., Gutman, M. J., Grubaugh, N. D., Gangavarapu, K., Sharkey, M., Silveira, C. G. T., Bailey, V. K., Pedreno-Lopez, N., Gonzalez-Nieto, L., et al. Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naive individual during the 2016 outbreak in Miami, FL PLoS Neglected Tropical Diseases  2017 11  DOI:10.1371/journal.pntd.0006000  PMID:29267278
    • degree-related publication Gangavarapu, K., Babji, V., Meissner, T., Su, A. I., Good, B. M. Branch: an interactive, web-based tool for testing hypotheses and developing predictive models Bioinformatics  2016 32:2072-2074  DOI:10.1093/bioinformatics/btw117  PMID:27153723  PMCID:PMC4920125
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Background

education and training

  • Ph.D. in Computational Biology, Scripps Research 2015 -
  • B.S. in Pharmacy, Birla Institute of Technology & Science, Pilani 2010 - 2014

advisee of

  • graduate advising relationship

    • Andersen, Kristian G., Ph.D.  candidacy, 2016 -
    • Su, Andrew, Ph.D.  candidacy, 2016 -
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Contact

full name

  • Karthik Gangavarapu

geographic location

  • Scripps California 

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