subject area of

• 'Two-stage double-technique hybrid (TSDTH)' identification strategy for the analysis of BMP2-induced transdifferentiation of premyoblast C2C12 cells to osteoblast  Academic Article
• A GTP affinity probe for proteomics highlights flexibility in purine nucleotide selectivity  Academic Article
• A chemical approach for the detection of protein sulfinylation  Academic Article
• A chemical biology approach to interrogate quorum-sensing regulated behaviors at the molecular and cellular level  Academic Article
• A chemoproteomic platform to quantitatively map targets of lipid-derived electrophiles  Academic Article
• A combined proteomics/genomics approach links hepatitis C virus infection with nonsense-mediated mRNA decay  Academic Article
• A comprehensive profile of brain enzymes that hydrolyze the endocannabinoid 2-arachidonoylglycerol  Academic Article
• A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses  Academic Article
• A computational approach to correct arginine-to-proline conversion in quantitative proteomics  Academic Article
• A correlation algorithm for the automated quantitative analysis of shotgun proteomics data  Academic Article
• A functional proteomic strategy to discover inhibitors for uncharacterized hydrolases  Academic Article
• A global metabolite profiling approach to identify protein-metabolite interactions  Academic Article
• A method for the comprehensive proteomic analysis of membrane proteins  Academic Article
• A model for random sampling and estimation of relative protein abundance in shotgun proteomics  Academic Article
• A peptidomics strategy to elucidate the proteolytic pathways that inactivate peptide hormones  Academic Article
• A periplasmic reducing system protects single cysteine residues from oxidation  Academic Article
• A phosphoproteomic analysis of the ErbB2 receptor tyrosine kinase signaling pathways  Academic Article
• A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites  Academic Article
• A proteomic comparison of excretion/secretion products in Fasciola hepatica newly excysted juveniles (NEJ) derived from Lymnaea viatrix or Pseudosuccinea columella  Academic Article
• A proteomic glimpse into human ureter proteome  Academic Article
• A proteomic signature of dormancy in the actinobacterium Micrococcus luteus  Academic Article
• A quantitative analysis software tool for mass spectrometry-based proteomics  Academic Article
• A shotgun proteomic method for the identification of membrane-embedded proteins and peptides  Academic Article
• A shotgun proteomic study of the protein corona associated with cholesterol and atheronal-b surface-modified quantum dots  Academic Article
• A streamlined platform for high-content functional proteomics of primary human specimens  Academic Article
• A systematic approach to modeling, capturing, and disseminating proteomics experimental data  Academic Article
• A tandem orthogonal proteolysis strategy for high-content chemical proteomics  Academic Article
• A unique sorting nexin regulates trafficking of potassium channels via a PDZ domain interaction  Academic Article
• ALS-linked mutant superoxide dismutase 1 (SOD1) alters mitochondrial protein composition and decreases protein import  Academic Article
• Active site-directed proteomic probes for adenylation domains in nonribosomal peptide synthetases  Academic Article
• Activity profile of dust mite allergen extract using substrate libraries and functional proteomic microarrays  Academic Article
• Activity-based probes for functional proteomics  Academic Article
• Activity-based probes for proteomic profiling of histone deacetylase complexes  Academic Article
• Activity-based probes for the proteomic profiling of metalloproteases  Academic Article
• Activity-based protein profiling for biochemical pathway discovery in cancer  Academic Article
• Activity-based protein profiling for the functional annotation of enzymes  Academic Article
• Activity-based protein profiling in vivo using a copper(i)-catalyzed azide-alkyne 3+2 cycloaddition  Academic Article
• Activity-based protein profiling: From enzyme chemistry to proteomic chemistry  Academic Article
• Activity-based proteomics of enzyme superfamilies: Serine hydrolases as a case study  Academic Article
• Adaptation of energy metabolism in breast cancer brain metastases  Academic Article
• Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics  Academic Article
• Advances in human proteomics at high scale with the SOMAscan proteomics platform  Academic Article
• Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions  Academic Article
• An isotopically tagged azobenzene-based cleavable linker for quantitative proteomics  Academic Article
• An orthogonal active site identification system (OASIS) for proteomic profiling of natural product  Academic Article
• Analysis of URI nuclear interaction with RPB5 and components of the R2TP/prefoldin-like complex  Academic Article
• Analysis of organelles by on-line two-dimensional liquid chromatography-tandem mass spectrometry  Academic Article
• Analysis of the Shewanella oneidensis proteome by two-dimensional gel electrophoresis under nondenaturing conditions  Academic Article
• Analysis of the proteolysis of bioactive peptides using a peptidomics approach  Academic Article
• Analytical platforms for activity-based protein profiling - exploiting the versatility of chemistry for functional proteomics  Academic Article
• Analyzing marginal cases in differential shotgun proteomics  Academic Article
• Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides  Academic Article
• Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast  Academic Article
• Application of activity-based protein profiling to study enzyme function in adipocytes  Academic Article
• Application of capture-recapture models to estimation of protein count in MudPIT experiments  Academic Article
• Application of mass spectrometry to study proteomics and interactomics in cystic fibrosis  Academic Article
• Applied systems biology and malaria  Academic Article
• Applying genomics to organ transplantation medicine in both discovery and validation of biomarkers  Academic Article
• Aptamer-based multiplexed proteomic technology for biomarker discovery  Academic Article
• Aptamers and the RNA world, past and present  Academic Article
• Assessment of the red cell proteome of young patients with unexplained hemolytic anemia by two-dimensional differential in-gel electrophoresis (dige)  Academic Article
• Assignment of protein function in the postgenomic era  Academic Article
• Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra  Academic Article
• Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples  Academic Article
• Automatic annotation of matrix-assisted laser desorption/ionization n-glycan spectra  Academic Article
• BDNF induces widespread changes in synaptic protein content and up-regulates components of the translation machinery: an analysis using high-throughput proteomics  Academic Article
• Behavioral and proteomic analysis of stress response in zebrafish (Danio rerio)  Academic Article
• Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood  Academic Article
• Breast cancer cell lines grown in vivo: What goes in isn't always the same as what comes out  Academic Article
• CDC25B mediates rapamycin-induced oncogenic responses in cancer cells  Academic Article
• CEBS object model for systems biology data, SysBio-OM  Academic Article
• Can the false-discovery rate be misleading?  Academic Article
• Cancer proteomics by quantitative shotgun proteomics  Academic Article
• Capillary electrophoresis applied to proteomic analysis  Academic Article
• Carbohydrate-encapsulated gold nanoparticles for rapid target-protein identification and binding-epitope mapping  Academic Article
• Cell cycle phosphorylation of mitotic exit network (MEN) proteins  Academic Article
• Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation  Academic Article
• Census for proteome quantification  Academic Article
• Central limit theorem as an approximation for intensity-based scoring function  Academic Article
• Cerebrospinal fluid proteomics reveals potential pathogenic changes in the brains of SIV-infected monkeys  Academic Article
• Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression Saccharomyces cerevisiae strains: the comparison of two quantitative methods  Academic Article
• Characterization of protein serotonylation via bioorthogonal labeling and enrichment  Academic Article
• Characterization of proteomic and metabolomic responses to dietary factors and supplements  Academic Article
• Characterization of tetrahymena histone h2b variants and posttranslational populations by electron capture dissociation (ecd) fourier transform ion cyclotron mass spectrometry (ft-icr ms)  Academic Article
• Characterization of the 26S proteasome network in Plasmodium falciparum  Academic Article
• Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry  Academic Article
• Chemical 'omics' approaches for understanding protein cysteine oxidation in biology  Academic Article
• Chemical proteomic platform to identify citrullinated proteins  Academic Article
• Chemical proteomic probes for profiling cytochrome P450 activities and drug interactions in vivo  Academic Article
• Chemical proteomics with sulfonyl fluoride probes reveals selective labeling of functional tyrosines in glutathione transferases  Academic Article
• Chemical reporters for fluorescent detection and identification of O-GlcNAc-modified proteins reveal glycosylation of the ubiquitin ligase NEDD4-1  Academic Article
• Chemical strategies for activity-based proteomics  Academic Article
• Chemical strategies for functional proteomics  Academic Article
• Chemo-resistant protein expression pattern of glioblastoma cells (A172) to perillyl alcohol  Academic Article
• Chemoproteomic discovery of AADACL1 as a regulator of human platelet activation  Academic Article
• Chemoproteomic discovery of cysteine-containing human short open reading frames  Academic Article
• Chemoproteomic evaluation of target engagement by the cyclin-dependent kinase 4 and 6 inhibitor palbociclib correlates with cancer cell response  Academic Article
• Chemoproteomic profiling identifies changes in DNA-PK as markers of early dengue virus infection  Academic Article
• Chemoproteomic profiling of host and pathogen enzymes active in cholera  Academic Article
• Chemoproteomic screening of covalent ligands reveals UBA5 as a novel pancreatic cancer target  Academic Article
• Chemoproteomics-enabled discovery of a potent and selective inhibitor of the DNA repair protein MGMT  Academic Article
• Chemoselective probes for metabolite enrichment and profiling  Academic Article
• Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins  Academic Article
• Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases  Academic Article
• Citrullination regulates pluripotency and histone H1 binding to chromatin  Academic Article
• Clinical and plasma proteomic markers correlating with chronic kidney disease after liver transplantation  Academic Article
• Combined integrin phosphoproteomic analyses and small interfering RNA-based functional screening identify key regulators for cancer cell adhesion and migration  Academic Article
• Comparative analysis of cleavable azobenzene-based affinity tags for bioorthogonal chemical proteomics  Academic Article
• Comparative assessment of large-scale proteomic studies of apoptotic proteolysis  Academic Article
• Comparative proteome analysis using amine-reactive isobaric tagging reagents coupled with 2D LC/MS/MS in 3T3-L1 adipocytes following hypoxia or normoxia  Academic Article
• Comparative proteomic analysis of the aging soleus and extensor digitorum longus rat muscles using TMT labeling and mass spectrometry  Academic Article
• Comparative proteomic analysis of the insulin-induced L6 myotube secretome  Academic Article
• Comparative proteomics reveals a diagnostic signature for pulmonary head-and-neck cancermetastasis  Academic Article
• Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method  Academic Article
• Complete protein characterization using top-down mass spectrometry and ultraviolet photodissociation  Academic Article
• Composition and structure of the 80S ribosome from the green alga Chlamydomonas reinhardtii: 80S ribosomes are conserved in plants and animals  Academic Article
• Contemporary, yeast-based approaches to understanding human genetic variation  Academic Article
• Coregulator interactions with the thyroid hormone receptor  Academic Article
• Curation of the mammalian palmitoylome indicates a pivotal role for palmitoylation in diseases and disorders of the nervous system and cancers  Academic Article
• Cvak104 is a novel poly-l-lysine-stimulated kinase that targets the beta 2-subunit of ap2  Academic Article
• Cysteine-specific chemical proteomics: from target identification to drug discovery  Academic Article
• DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics  Academic Article
• DYn-2 based identification of Arabidopsis sulfenomes  Academic Article
• Determining the protein repertoire of Cryptosporidium parvum sporozoites  Academic Article
• Development of trifunctional probes for glycoproteomic analysis  Academic Article
• Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate  Academic Article
• Differential proteomic analysis of mammalian tissues using SILAM  Academic Article
• Differential recovery of peptides from sample tubes and the reproducibility of quantitative proteomic data  Academic Article
• Digestion and depletion of abundant proteins improves proteomic coverage  Academic Article
• Direct detection of biotinylated proteins by mass spectrometry  Academic Article
• Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture  Academic Article
• Discovering disease-associated enzymes by proteome reactivity profiling  Academic Article
• Discovering potent and selective reversible inhibitors of enzymes in complex proteomes  Academic Article
• Discovery of a potent, selective, and efficacious class of reversible alpha-ketoheterocycle inhibitors of fatty acid amide hydrolase effective as analgesics  Academic Article
• Discovery of an exceptionally potent and selective class of fatty acid amide hydrolase inhibitors enlisting proteome-wide selectivity screening: concurrent optimization of enzyme inhibitor potency and selectivity  Academic Article
• Disparate proteome reactivity profiles of carbon electrophiles  Academic Article
• Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms  Academic Article
• Distinct protein classes including novel merozoite surface antigens in Raft-like membranes of Plasmodium falciparum  Academic Article
• Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcohol  Academic Article
• Dynamics of subcellular proteomes during brain development  Academic Article
• ERdj3 Is an endoplasmic reticulum degradation factor for mutant glucocerebrosidase variants linked to Gaucher's disease  Academic Article
• Ecto-Fc MS identifies ligand-receptor interactions through extracellular domain Fc fusion protein baits and shotgun proteomic analysis  Academic Article
• Editorial overview: Omics: The maturation of chemical biology  Academic Article
• Emerging Miniaturized Proteomic Technologies to Study Cell Signaling in Clinical Samples  Academic Article
• Endothelial targeting of cowpea mosaic virus (CPMV) via surface vimentin  Academic Article
• Energy dependence of HCD on peptide fragmentation: stepped collisional energy finds the sweet spot  Academic Article
• Enzyme inhibitor discovery by activity-based protein profiling  Academic Article
• Evaluation of sulfatase-directed quinone methide traps for proteomics  Academic Article
• Expanding the dipeptidyl peptidase 4-regulated peptidome via an optimized peptidomics platform  Academic Article
• Exploring the proteome of Plasmodium  Academic Article
• Extent of protein-protein interactions and quasi-equivalence in viral capsids  Academic Article
• FKBP10 depletion enhances glucocerebrosidase proteostasis in Gaucher disease fibroblasts  Academic Article
• False-positive rate determination of protein target discovery using a covalent modification- and mass spectrometry-based proteomics platform  Academic Article
• Fluorescent profiling of modular biosynthetic enzymes by complementary metabolic and activity based probes  Academic Article
• From SOMAmer-based biomarker discovery to diagnostic and clinical applications: a SOMAmer-based, streamlined multiplex proteomic assay  Academic Article
• From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics  Academic Article
• Functional analysis of protein targets by metabolomic approaches  Academic Article
• Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome  Academic Article
• Functional interrogation of kinases and other nucleotide-binding proteins  Academic Article
• Functional proteogenomics: embracing complexity  Academic Article
• Functional proteomic and structural insights into molecular recognition in the nitrilase family enzymes  Academic Article
• Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways  Academic Article
• Functional specialization of beta-arrestin interactions revealed by proteomic analysis  Academic Article
• G protein-coupled receptor endocytosis confers uniformity in responses to chemically distinct ligands  Academic Article
• Games with a scientific purpose  Academic Article
• GeneDig: a web application for accessing genomic and bioinformatics knowledge  Academic Article
• Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome  Academic Article
• Genomic studies in stem cell systems  Academic Article
• Genomics and proteomics in solving brain complexity  Academic Article
• Glial membranes at the node of Ranvier prevent neurite outgrowth  Academic Article
• Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL  Academic Article
• Global approaches for telling time: omics and the Arabidopsis circadian clock  Academic Article
• Global identification of caspase substrates using PROTOMAP (Protein Topography and Migration Analysis Platform)  Academic Article
• Global mapping of the topography and magnitude of proteolytic events in apoptosis  Academic Article
• Global profiling strategies for mapping dysregulated metabolic pathways in cancer  Academic Article
• Global, in situ, site-specific analysis of protein S-sulfenylation  Academic Article
• Heat-shock response transcriptional program enables high-yield and high-quality recombinant protein production in Escherichia coli  Academic Article
• Hierarchical and multi-resolution representation of protein flexibility  Academic Article
• High-resolution functional proteomics by active-site peptide profiling  Academic Article
• High-throughput expression and detergent screening of integral membrane proteins  Academic Article
• Highly multiplexed proteomic platform for biomarker discovery, diagnostics, and therapeutics  Academic Article
• Histone citrullination by protein arginine deiminase: Is arginine methylation a green light or a roadblock?  Academic Article
• Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production  Academic Article
• Human Proteinpedia enables sharing of human protein data  Academic Article
• Identification and characterization of sORF-encoded polypeptides  Academic Article
• Identification of GABA(c) receptor protein homeostasis network components from three tandem mass spectrometry proteomics approaches  Academic Article
• Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data  Academic Article
• Identification of a tumor specific, active-site mutation in casein kinase 1α by chemical proteomics  Academic Article
• Identification of covalent bromodomain binders through DNA display of small molecules  Academic Article
• Identification of evening complex associated proteins in Arabidopsis by affinity purification and mass spectrometry  Academic Article
• Identification of microprotein-protein interactions via APEX tagging  Academic Article
• Identification of mycobacterium tuberculosis h37rv integral membrane proteins by one-dimensional gel electrophoresis and liquid chromatography electrospray ionization tandem mass spectrometry  Academic Article
• Identification of novel chondroitin proteoglycans in Caenorhabditis elegans: embryonic cell division depends on CPG-1 and CPG-2  Academic Article
• Identification of novel integral membrane proteins of the nuclear envelope with potential disease links using subtractive proteomics  Academic Article
• Identification of novel targets for miR-29a using miRNA proteomics  Academic Article
• Identification of the low density lipoprotein (ldl) receptor-related protein-1 interactome in central nervous system myelin suggests a role in the clearance of necrotic cell debris  Academic Article
• Identification of tumor-associated antigens as diagnostic and predictive biomarkers in cancer  Academic Article
• Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry  Academic Article
• Identifying differences in protein expression levels by spectral counting and feature selection  Academic Article
• Impact of ion trap tandem mass spectra variability on the identification of peptides  Academic Article
• Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT  Academic Article
• Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data  Academic Article
• Improving the TFold test for differential shotgun proteomics  Academic Article
• Improving the comprehensiveness and sensitivity of sheath less capillary electrophoresis-tandem mass spectrometry for proteomic analysis  Academic Article
• In situ trans ligands of CD22 identified by glycan-protein photocross-linking-enabled proteomics  Academic Article
• In vivo brain GPCR signaling elucidated by phosphoproteomics  Academic Article
• In vivo modification of native carrier protein domains  Academic Article
• In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation  Academic Article
• In vivo tagging and characterization of S-glutathionylated proteins by a chemoenzymatic method  Academic Article
• In-cell selectivity profiling of serine protease inhibitors by activity-based proteomics  Academic Article
• In-line separation by capillary electrophoresis prior to analysis by top-down mass spectrometry enables sensitive characterization of protein complexes  Academic Article
• Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0  Academic Article
• Integrated phenotypic and activity-based profiling links Ces3 to obesity and diabetes  Academic Article
• Integrated proteomic analysis of major isoaspartyl-containing proteins in the urine of wild type and protein L-isoaspartate O-methyltransferase-deficient mice  Academic Article
• Integration of cardiac proteome biology and medicine by a specialized knowledgebase  Academic Article
• Integrin alpha beta 1, alpha(v)beta, alpha(6)beta effectors p130Cas, Src and talin regulate carcinoma invasion and chemoresistance  Academic Article
• Interference-free proteome quantification with MS/MS-based isobaric isotopologue detection  Academic Article
• International research networks in viral structural proteomics: Again, lessons from sars  Academic Article
• Introduction to section II: omics in the biology of cystic fibrosis  Academic Article
• Investigating endogenous peptides and peptidases using peptidomics  Academic Article
• Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry  Academic Article
• Isobaric labeling-based relative quantification in shotgun proteomics  Academic Article
• Isolation of focal adhesion proteins for biochemical and proteomic analysis  Academic Article
• Kinome-wide selectivity profiling of ATP-competitive mammalian target of rapamycin (mTOR) inhibitors and characterization of their binding kinetics  Academic Article
• LDL receptor-related protein 1 regulates the abundance of diverse cell-signaling proteins in the plasma membrane proteome  Academic Article
• Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis  Academic Article
• Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT)  Academic Article
• Large-scale differential proteome analysis in Plasmodium falciparum under drug treatment  Academic Article
• Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach  Academic Article
• Large-scale profiling of protein palmitoylation in mammalian cells  Academic Article
• Large-scale protein identification using mass spectrometry  Academic Article
• Large-scate database searching using tandem mass spectra: looking up the answer in the back of the book  Academic Article
• Letter to the editor: NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis  Academic Article
• Maintaining retinal astrocytes normalizes revascularization and prevents vascular pathology associated with oxygen-induced retinopathy  Academic Article
• Mapping pathways downstream of sphingosine 1-phosphate subtype 1 by differential chemical perturbation and proteomics  Academic Article
• Mass spectral analysis in proteomics  Academic Article
• Mass spectrometry accelerates membrane protein analysis  Academic Article
• Mass spectrometry as an emerging tool for systems biology  Academic Article
• Mass spectrometry for proteomics  Academic Article
• Mass spectrometry in high-throughput proteomics: ready for the big time  Academic Article
• Mass spectrometry reveals specific and global molecular transformations during viral infection  Academic Article
• Mass spectrometry-based neuropeptidomics of secretory vesicles from human adrenal medullary pheochromocytoma reveals novel peptide products of prohormone processing  Academic Article
• Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry  Academic Article
• Mechanism of carbamate inactivation of FAAH: Implications for the design of covalent inhibitors and in vivo functional probes for enzymes  Academic Article
• Mechanism-based post-translational modification and inactivation in terpene synthases  Academic Article
• Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis  Academic Article
• Methods for the elucidation of protein-small molecule interactions  Academic Article
• MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes  Academic Article
• Microbial metalloproteomes are largely uncharacterized  Academic Article
• Mitotic spindle proteomics in Chinese hamster ovary cells  Academic Article
• Mixed-element capture agents: A simple strategy for the construction of synthetic, high-affinity protein capture ligands  Academic Article
• Modified MuDPIT separation identified 4488 proteins in a system-wide analysis of quiescence in yeast  Academic Article
• Molecular architecture of the human pre-mRNA 3' processing complex  Academic Article
• Molecular mechanisms of chronic kidney transplant rejection via large-scale proteogenomic analysis of tissue biopsies  Academic Article
• Molecular stages of rapid and uniform neuralization of human embryonic stem cells  Academic Article
• Motif-specific sampling of phosphoproteomes  Academic Article
• Multidimensional lc separations in shotgun proteomics  Academic Article
• Multiplexed immunoassay: quantitation and profiling of serum biomarkers using magnetic nanoprobes and MALDI-TOF MS  Academic Article
• NMR studies of structure and function of biological macromolecules (Nobel lecture)  Academic Article
• Nanodiscs and SILAC-based mass spectrometry to identify a membrane protein interactome  Academic Article
• Nanoprobe-based immobilized metal affinity chromatography for sensitive and complementary enrichment of multiply phosphorylated peptides  Academic Article
• Ndrg2 is a PGC-1α/ERRα target gene that controls protein synthesis and expression of contractile-type genes in C2C12 myotubes  Academic Article
• Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation  Academic Article
• Neuropeptidomic components generated by proteomic functions in secretory vesicles for cell-cell communication  Academic Article
• New approach to capture and characterize synaptic proteome  Academic Article
• New insights into the role of Plg-RKT in macrophage recruitment  Academic Article
• Nmr structure determination of the conserved hypothetical protein tm1816 from thermotoga maritima  Academic Article
• Novel biology and druggable targets via chemoproteomics  Academic Article
• Nuclear membrane proteins with potential disease links found by subtractive proteomics  Academic Article
• O-GlcNAc transferase/host cell factor C1 complex regulates gluconeogenesis by modulating PGC-1α stability  Academic Article
• Optimization of activity-based probes for proteomic profiling of histone deacetylase complexes  Academic Article
• Optimization of mass spectrometry-compatible surfactants for shotgun proteomics  Academic Article
• Organellar proteomics reveals Golgi arginine dimethylation  Academic Article
• Overflow metabolism in Escherichia coli results from efficient proteome allocation  Academic Article
• PNA-encoded protease substrate microarrays  Academic Article
• PSEA-Quant: a protein set enrichment analysis on label-free and label-based protein quantification data  Academic Article
• PYR/PYL/RCAR family members are major in vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis  Academic Article
• Palmitoylome profiling reveals S-palmitoylation-dependent antiviral activity of IFITM3  Academic Article
• PatternLab for proteomics: a tool for differential shotgun proteomics  Academic Article
• PatternLab: from mass spectra to label-free differential shotgun proteomics  Academic Article
• PepExplorer: a similarity-driven tool for analyzing de novo sequencing results  Academic Article
• Peptidomics approach to elucidate the proteolytic regulation of bioactive peptides  Academic Article
• Peptidomics methods for the identification of peptidase-substrate interactions  Academic Article
• Peptidomics of prolyl endopeptidase in the central nervous system  Academic Article
• Peptidomics of the prolyl peptidases  Academic Article
• Performance of a linear ion trap-Orbitrap hybrid for peptide analysis  Academic Article
• Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia  Academic Article
• Phosphatidylinositol 3,4,5-trisphosphate activity probes for the labeling and proteomic characterization of protein binding partners  Academic Article
• Phosphoproteomic analysis of human embryonic stem cells  Academic Article
• Phosphoproteomics  Academic Article
• Photoaptamer arrays applied to multiplexed proteomic analysis  Academic Article
• Physiological and molecular alterations promoted by Schizotetranychus oryzae mite infestation in rice leaves  Academic Article
• Pivotal role of computers and software in mass spectrometry - SEQUEST and 20 years of tandem MS database searching  Academic Article
• Plasma membrane proteomics of human breast cancer cell lines identifies potential targets for breast cancer diagnosis and treatment  Academic Article
• Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry  Academic Article
• Platelets: Developmental biology, physiology, and translatable platforms for preclinical investigation and drug development  Academic Article
• Potent and selective alpha-ketoheterocycle-based inhibitors of the anandamide and oleamide catabolizing enzyme, fatty acid amide hydrolase  Academic Article
• Practical 4 '-phosphopantetheine active site discovery from proteomic samples  Academic Article
• Prediction of functionally important phospho-regulatory events in xenopus laevis oocytes  Academic Article
• Preliminary quantitative profile of differential protein expression between rat L6 myoblasts and myotubes by stable isotope labeling with amino acids in cell culture  Academic Article
• Probing the membrane environment of the TOR kinases reveals functional interactions between TORC1, actin, and membrane trafficking in Saccharomyces cerevisiae  Academic Article
• Profiling enzyme activities in vivo using click chemistry methods  Academic Article
• Profiling phospho-signaling networks in breast cancer using reverse-phase protein arrays  Academic Article
• Profiling protein thiol oxidation in tumor cells using sulfenic acid-specific antibodies  Academic Article
• Protein S-nitrosylation in Plasmodium falciparum  Academic Article
• Protein analysis by shotgun/bottom-up proteomics  Academic Article
• Protein identification using 2D-LC-MS/MS  Academic Article
• Protein kinase C-eta controls CTLA-4-mediated regulatory T cell function  Academic Article
• Protein microarrays and proteomics  Academic Article
• Protein production and purification  Academic Article
• Protein trafficking and anchoring complexes revealed by proteomic analysis of inward rectifier potassium channel (Kir2.x)-associated proteins  Academic Article
• ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects  Academic Article
• Proteome-wide mapping of cholesterol-interacting proteins in mammalian cells  Academic Article
• Proteomic analysis of fatty-acylated proteins in mammalian cells with chemical reporters reveals S-acylation of histone H3 variants  Academic Article
• Proteomic analysis of human immunodeficency virus using liquid chromatography/tandem mass spectrometry effectively distinguishes specific incorporated host proteins  Academic Article
• Proteomic analysis of isolated Chlamydomonas centrioles reveals orthologs of ciliary-disease genes  Academic Article
• Proteomic analysis of mammalian primary cilia  Academic Article
• Proteomic analysis of methamphetamine-induced reinforcement processes within the mesolimbic dopamine system  Academic Article
• Proteomic analysis of peptides tagged with dimedone and related probes  Academic Article
• Proteomic analysis of plasmodium in the mosquito: progress and pitfalls  Academic Article
• Proteomic analysis of polyketide and nonribosomal peptide biosynthesis  Academic Article
• Proteomic analysis of the coagulation reaction in plasma and whole blood using protomap  Academic Article
• Proteomic analysis of tumor necrosis factor-alpha (TNF-α)-induced L6 myotube secretome reveals novel TNF-α-dependent myokines in diabetic skeletal muscle  Academic Article
• Proteomic analysis of wild-type and mutant huntingtin-associated proteins in mouse brains identifies unique interactions and involvement in protein synthesis  Academic Article
• Proteomic analysis of zygote and ookinete stages of the avian malaria parasite Plasmodium gallinaceum delineates the homologous proteomes of the lethal human malaria parasite Plasmodium falciparum  Academic Article
• Proteomic analysis provides insights on venom processing in Conus textile  Academic Article
• Proteomic analysis reveals a role for Bcl2-associated athanogene 3 and major vault protein in resistance to apoptosis in senescent cells by regulating ERK1/2 activation  Academic Article
• Proteomic approach to coronary atherosclerosis shows ferritin light chain as a significant marker: Evidence consistent with iron hypothesis in atherosclerosis  Academic Article
• Proteomic comparison of four Eimeria tenella life-cycle stages: unsporulated oocyst, sporulated oocyst, sporozoite and second-generation merozoite  Academic Article
• Proteomic comparison of two fractions derived from the transsynaptic scaffold  Academic Article
• Proteomic identification of Hsc70 as a mediator of RGS9-2 degradation by in vivo interactome analysis  Academic Article
• Proteomic identification of palmitoylated proteins  Academic Article
• Proteomic profile of Cryptococcus neoformans biofilm reveals changes in metabolic processes  Academic Article
• Proteomic profiling of mechanistically distinct enzyme classes using a common chemotype  Academic Article
• Proteomic profiling of metalloprotease activities with cocktails of active-site probes  Academic Article
• Proteomic profiling of the influence of iron availability on Cryptococcus gattii  Academic Article
• Proteomic signature of fatty acid biosynthesis inhibition available for in vivo mechanism-of-action studies  Academic Article
• Proteomics analysis of cardiac muscle from rats with peroxisomal proliferator-activated receptor α (PPARα) stimulation  Academic Article
• Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3  Academic Article
• Proteomics and pulse azidohomoalanine labeling of newly synthesized proteins: what are the potential applications?  Academic Article
• Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes  Academic Article
• Proteomics by mass spectrometry: approaches, advances, and applications  Academic Article
• Proteomics in malaria  Academic Article
• Proteomics of Pyrococcus furiosus (Pfu): identification of extracted proteins by three independent methods  Academic Article
• Proteomics of dense core secretory vesicles reveal distinct protein categories for secretion of neuroeffectors for cell-cell communication  Academic Article
• Proteomics of integral membrane proteins-theory and application  Academic Article
• Proteomics of organelles and large cellular structures  Academic Article
• Proteomics opens doors to the mechanisms of developmentally regulated secretion  Academic Article
• Proteomics-based discovery of a novel, structurally unique, and developmentally regulated plasminogen receptor, Plg-RKT, a major regulator of cell surface plasminogen activation  Academic Article
• Proteomics: where's Waldo in yeast?  Academic Article
• Pseudopodium-enriched atypical kinase 1 regulates the cytoskeleton and cancer progession  Academic Article
• Pulsed azidohomoalanine labeling in mammals (PALM) detects changes in liver-specific LKB1 knockout mice  Academic Article
• Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development  Academic Article
• Quantifying protein-protein interactions in high throughput using protein domain microarrays  Academic Article
• Quantitative analysis of age specific variation in the abundance of human female parotid salivary proteins  Academic Article
• Quantitative analysis of human pluripotency and neural specification by in-depth (phospho) proteomic profiling  Academic Article
• Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution  Academic Article
• Quantitative mass spectrometry identifies insulin signaling targets in C. elegans  Academic Article
• Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway  Academic Article
• Quantitative phosphoproteomic profiling of PINK1-deficient cells identifies phosphorylation changes in nuclear proteins  Academic Article
• Quantitative plasma proteomic profiling identifies the vitamin E binding protein afamin as a potential pathogenic factor in SIV induced CNS disease  Academic Article
• Quantitative proteomic analysis identifies targets and pathways of a 2-aminobenzamide HDAC inhibitor in Friedreich's ataxia patient iPSC-derived neural stem cells  Academic Article
• Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice  Academic Article
• Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria  Academic Article
• Quantitative proteomic approach for cellulose degradation by Neurospora crassa  Academic Article
• Quantitative proteomic profiling reveals differentially regulated proteins in cystic fibrosis cells  Academic Article
• Quantitative proteomics  Academic Article
• Quantitative proteomics approach for identifying protein-drug interactions in complex mixtures using protein stability measurements  Academic Article
• Quantitative proteomics of human fibroblasts with I1061T mutation in Niemann-Pick C1 (NPC1) protein provides insights into the disease pathogenesis  Academic Article
• Quantitative proteomics of parotid saliva in primary Sjögren's syndrome  Academic Article
• Quantitative proteomics of the thyroid hormone receptor-coregulator interactions  Academic Article
• Quantitative reactivity profiling predicts functional cysteines in proteomes  Academic Article
• RBBP9: A tumor-associated serine hydrolase activity required for pancreatic neoplasia  Academic Article
• RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis  Academic Article
• Rationale for the development of 2-aminobenzamide histone deacetylase inhibitors as therapeutics for Friedreich ataxia  Academic Article
• Receptor rigidity and ligand mobility in trypsin-ligand complexes  Academic Article
• Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)  Academic Article
• Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)  Academic Article
• Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)  Academic Article
• Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: The Amsterdam Principles  Academic Article
• Redox-based reagents for chemoselective methionine bioconjugation  Academic Article
• Regulation of Sufu activity by p66 beta and Mycbp provides new insight into vertebrate Hedgehog signaling  Academic Article
• Regulation of myoblast differentiation by the nuclear envelope protein NET39  Academic Article
• Remedial strategies in structural proteomics: Expression, purification, and crystallization of the vav1/rac1 complex  Academic Article
• Renal systems biology of patients with systemic inflammatory response syndrome  Academic Article
• Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology  Academic Article
• Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer  Academic Article
• Reversible inhibitors of fatty acid amide hydrolase that promote analgesia: evidence for an unprecedented combination of potency and selectivity  Academic Article
• Review of proteomics with applications to genetic epidemiology  Academic Article
• Rtn1p is involved in structuring the cortical endoplasmic reticulum  Academic Article
• Saliva from nymph and adult females of Haemaphysalis longicornis: a proteomic study  Academic Article
• Scalable high-throughput micro-expression device for recombinant proteins  Academic Article
• Scanning the human genome with combinatorial transcription factor libraries  Academic Article
• Scientific frontiers: emerging technologies for salivary diagnostics  Academic Article
• Search engine processor: filtering and organizing peptide spectrum matches  Academic Article
• Secreted IGFBP5 mediates mTORC1-dependent feedback inhibition of IGF-1 signalling  Academic Article
• Secretome of the biocontrol agent Metarhizium anisopliae induced by the cuticle of the cotton pest Dysdercus peruvianus reveals new insights into infection  Academic Article
• Selective inhibition of plant serine hydrolases by agrochemicals revealed by competitive ABPP  Academic Article
• Selective inhibitor of platelet-activating factor acetylhydrolases 1b2 and 1b3 that impairs cancer cell survival  Academic Article
• Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale  Academic Article
• Short communication: Quantitative proteomic plasma profiling reveals activation of host defense to oxidative stress in chronic SIV and methamphetamine comorbidity  Academic Article
• Shotgun protein identification and quantification by mass spectrometry in neuroproteomics  Academic Article
• Shotgun proteomics and biomarker discovery  Academic Article
• Shotgun proteomics in neuroscience  Academic Article
• Shotgun proteomics: integrating technologies to answer biological questions  Academic Article
• Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway?  Academic Article
• Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility  Academic Article
• Simultaneous structure-activity studies and arming of natural products by C-H amination reveal cellular targets of eupalmerin acetate  Academic Article
• Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT  Academic Article
• Single-stranded DNA as a cleavable linker for bioorthogonal click chemistry-based proteomics  Academic Article
• Site-specific protein modification: advances and applications  Academic Article
• Site-specific proteomic mapping identifies selectively modified regulatory cysteine residues in functionally distinct protein networks  Academic Article
• Small, but mighty? Searching for human microproteins and their potential for understanding health and disease  Academic Article
• Sod2-deficiency anemia: Protein oxidation and altered protein expression reveal targets of damage, stress response, and antioxidant responsiveness  Academic Article
• Species specificity in major urinary proteins by parallel evolution  Academic Article
• Sperm chromatin proteomics identifies evolutionarily conserved fertility factors  Academic Article
• Stable isotope labeling of mammals (SILAM) for in vivo quantitative proteomic analysis  Academic Article
• Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor  Academic Article
• Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometry  Academic Article
• Strategies for shotgun identification of post-translational modifications by mass spectrometry  Academic Article
• Streptococcus mutans protein synthesis during mixed-species biofilm development by high-throughput quantitative proteomics  Academic Article
• Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments  Academic Article
• Structure and function of fatty acid amide hydrolase  Academic Article
• Substrate mimicry in an activity-based probe that targets the nitrilase family of enzymes  Academic Article
• Substrate screening identifies a novel target sequence for the proteasomal activity regulated by ionizing radiation  Academic Article
• Synergistic computational and experimental proteomics approaches for more accurate detection of active serine hydrolases in yeast  Academic Article
• Systems biology of circadian rhythms: an outlook  Academic Article
• T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component  Academic Article
• Tailored glycoproteomics and glycan site mapping using saccharide-selective bioorthogonal probes  Academic Article
• Tandem orthogonal proteolysis-activity-based protein profiling (TOP-ABPP) - a general method for mapping sites of probe modification in proteomes  Academic Article
• Target identification for a Hedgehog pathway inhibitor reveals the receptor GPR39  Academic Article
• Targeted label-free quantitative analysis of secretory proteins from adipocytes in response to oxidative stress  Academic Article
• The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins  Academic Article
• The application of mass spectrometry to membrane proteomics  Academic Article
• The biological impact of mass-spectrometry-based proteomics  Academic Article
• The challenge of protein structure determination - lessons from structural genomics  Academic Article
• The expanding landscape of the thiol redox proteome  Academic Article
• The functional proteomics toolbox: methods and applications  Academic Article
• The future of proteomic analysis in biological systems and molecular medicine  Academic Article
• The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5  Academic Article
• The lifespan-promoting effect of acetic acid and reishi polysaccharide  Academic Article
• The minimum information about a proteomics experiment (MIAPE)  Academic Article
• The nuclear membrane proteome: extending the envelope  Academic Article
• The protein architecture of human secretory vesicles reveals differential regulation of signaling molecule secretion by protein kinases  Academic Article
• The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation  Academic Article
• The revolution and evolution of shotgun proteomics for large-scale proteome analysis  Academic Article
• The tyrosine kinase inhibitor gefitinib restricts mycobacterium tuberculosis growth through increased lysosomal biogenesis and modulation of cytokine signaling  Academic Article
• Three distinct condensin complexes control C. elegans chromosome dynamics  Academic Article
• Tissue-specific proteome tagging: an orthogonal approach  Academic Article
• Top down proteomics  Academic Article
• Toward objective evaluation of proteomic algorithms  Academic Article
• Transcriptomic and proteomic analyses of a Wolbachia-free filarial parasite provide evidence of trans-kingdom horizontal gene transfer  Academic Article
• Trifunctional chemical probes for the consolidated detection and identification of enzyme activities from complex proteomes  Academic Article
• Trypanosoma brucei PRMT1 is a nucleic acid binding protein with a role in energy metabolism and the starvation stress response  Academic Article
• Using proteomic approach to identify tumor-associated antigens as markers in hepatocellular carcinoma  Academic Article
• What general conclusions can we draw from kinase profiling data sets?  Academic Article
• XDIA: improving on the label-free data-independent analysis  Academic Article
• YADA: a tool for taking the most out of high-resolution spectra  Academic Article
• betaCaMKII in lateral habenula mediates core symptoms of depression  Academic Article
• ∆F508 CFTR interactome remodelling promotes rescue of cystic fibrosis  Academic Article