subject area of

• A comparative analysis of HGSC and Celera human genome assemblies and gene sets  Academic Article
• A method for the comprehensive proteomic analysis of membrane proteins  Academic Article
• A structurally deviant member of the euplotes raikovi pheromone family: Er-23  Academic Article
• A systematic approach to modeling, capturing, and disseminating proteomics experimental data  Academic Article
• Amyloid fibril proteins and amyloidosis: chemical identification and clinical classification International Society of Amyloidosis 2016 Nomenclature Guidelines  Academic Article
• An essential GTpase promotes assembly of preribosomal RNA processing complexes  Academic Article
• Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra  Academic Article
• Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry  Academic Article
• Automated mass spectrometric sequence determination of cyclic peptide library members  Academic Article
• Automated sequence-specific protein NMR assignment using the memetic algorithm match  Academic Article
• Automatic quality assessment of peptide tandem mass spectra  Academic Article
• BCL::Align: sequence alignment and fold recognition with a custom scoring function online  Academic Article
• Characterization of the membrane domain subunit nuok (nd4l) of the nadh-quinone oxidoreductase from escherichia coli  Academic Article
• Co-expression of VAL- and TMT-opsins uncovers ancient photosensory interneurons and motorneurons in the vertebrate brain  Academic Article
• Combining phage display with de novo protein sequencing for reverse engineering of monoclonal antibodies  Academic Article
• Comparative assessment of large-scale proteomic studies of apoptotic proteolysis  Academic Article
• Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle  Academic Article
• Conserved amino acid residues of the NuoD segment important for structure and function of Escherichia coli NDH-1 (complex I)  Academic Article
• Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue  Academic Article
• Desorption/ionization on silicon (dios): A diverse mass spectrometry platform for protein characterization  Academic Article
• Expression and characterization of a humanized cocaine-binding antibody  Academic Article
• Full activation of enterococcus faecalis gelatinase by a c-terminal proteolytic cleavage  Academic Article
• Global analysis of posttranslational protein arginylation  Academic Article
• GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model  Academic Article
• HDX workbench: software for the analysis of H/D exchange MS data  Academic Article
• Habitat-specific type I polyketide synthases in soils and street sediments  Academic Article
• High-throughput screening methodology for the directed evolution of glycosyltransferases  Academic Article
• IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform  Academic Article
• Identification of novel chondroitin proteoglycans in Caenorhabditis elegans: embryonic cell division depends on CPG-1 and CPG-2  Academic Article
• Identification of the thiazolyl peptide GE37468 gene cluster from Streptomyces ATCC 55365 and heterologous expression in Streptomyces lividans  Academic Article
• Improving the TFold test for differential shotgun proteomics  Academic Article
• L-a virus at 3.4 Å resolution reveals particle architecture and mrna decapping mechanism  Academic Article
• Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT)  Academic Article
• Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach  Academic Article
• Large-scate database searching using tandem mass spectra: looking up the answer in the back of the book  Academic Article
• MS1, MS2, and SQT: three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications  Academic Article
• Mapping of Amino Acid Substitutions Conferring Herbicide Resistance in Wheat Glutathione Transferase  Academic Article
• Mechanism of human immunodeficiency virus type 1 resistance to monoclonal antibody b12 that effectively targets the site of cd4 attachment  Academic Article
• Molecular properties of matrilin-3 isolated from human growth cartilage  Academic Article
• Molecular recognition and binding free energy calculations in drug development  Academic Article
• Multidomain assembler (MDA) generates models of large multidomain proteins  Academic Article
• Multivariate-activity mining for molecular quasi-species in a glutathione transferase mutant library  Academic Article
• PepExplorer: a similarity-driven tool for analyzing de novo sequencing results  Academic Article
• Peptide cyclization and cyclodimerization by cu(i)-mediated azide-alkyne cycloaddition  Academic Article
• Predicting structurally conserved contacts for homologous proteins using sequence conservation filters  Academic Article
• ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity  Academic Article
• Protein evolution with an expanded genetic code  Academic Article
• Protein identification using 2D-LC-MS/MS  Academic Article
• ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects  Academic Article
• Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology  Academic Article
• Rosettaremodel: A generalized framework for flexible backbone protein design  Academic Article
• Sequence-specific resonance assignment of soluble nonglobular proteins by 7D APSY-NMR Spectroscopy  Academic Article
• Shotgun protein identification and quantification by mass spectrometry  Academic Article
• Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake  Academic Article
• Structural basis of severe acute respiratory syndrome coronavirus adp-ribose-1 ''-phosphate dephosphorylation by a conserved domain of nsp3  Academic Article
• Structural characterization of the circulating soluble FGF receptors reveals multiple isoforms generated by secretion and ectodomain shedding  Academic Article
• The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae  Academic Article
• The CD100 receptor interacts with its plexin B2 ligand to regulate epidermal gamma delta T cell function  Academic Article
• The Plasmodium falciparum clag9 gene encodes a rhoptry protein that is transferred to the host erythrocyte upon invasion  Academic Article
• The cAMP binding domain: An ancient signaling module  Academic Article
• The challenge of protein structure determination - lessons from structural genomics  Academic Article
• The crystal structure of a bacterial sufu-like protein defines a novel group of bacterial proteins that are similar to the n-terminal domain of human sufu  Academic Article
• Two modes of protein sequence evolution and their compositional dependencies  Academic Article
• VIPERdb(2): an enhanced and web API enabled relational database for structural virology  Academic Article
• Validation of tandem mass spectrometry database search results using DTASelect  Academic Article
• XCMS2: Processing tandem mass spectrometry data for metabolite identification and structural characterization  Academic Article
• XtalPred: A web server for prediction of protein crystallizability  Academic Article