recent publications

• academic article

  • Park, D. J., Dudas, G., Wohl, S., Goba, A., Whitmer, S. L. M., Andersen, K. G., Sealfon, R. S., Ladner, J. T., Kugelman, J. R., Matranga, C. B., Winnicki, S. M., Qu, J., et al. Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone Cell  2015 161:1516-1526  DOI:10.1016/j.cell.2015.06.007  PMID:26091036  PMCID:PMC4503805
  • Kugelman, J. R., Sanchez-Lockhart, M., Andersen, K. G., Gire, S., Park, D. J., Sealfon, R., Lin, A. E., Wohl, S., Sabeti, P. C., Kuhn, J. H., Palacios, G. F. Evaluation of the potential impact of Ebola virus genomic drift on the efficacy of sequence-based candidate therapeutics MBio  2015 6:e02227-14  DOI:10.1128/mBio.02227-14  PMID:25604787  PMCID:PMC4313914
  • Schieffelin, J. S., Shaffer, J. G., Goba, A., Gbakie, M., Gire, S. K., Colubri, A., Sealfon, R. S. G., Kanneh, L., Moigboi, A., Momoh, M., Fullah, M., Moses, L. M., et al. Clinical illness and outcomes in patients with Ebola in Sierra Leone New England Journal of Medicine  2014 371:2092-2100  DOI:10.1056/NEJMoa1411680  PMID:25353969  PMCID:PMC4318555
  • Kuhn, J. H., Andersen, K. G., Bao, Y., Bavari, S., Becker, S., Bennett, R. S., Bergman, N. H., Blinkova, O., Bradfute, S., Brister, J. R., Bukreyev, A., Chandran, K., et al. Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names Viruses-Basel  2014 6:3663-3682  DOI:10.3390/v6093663  PMID:25256396  PMCID:PMC4189044
  • Gire, S. K., Goba, A., Andersen, K. G., Sealfon, R. S. G., Park, D. J., Kanneh, L., Jalloh, S., Momoh, M., Fullah, M., Dudas, G., Wohl, S., Moses, L. M., et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak Science  2014 345:1369-1372  DOI:10.1126/science.1259657  PMID:25214632  PMCID:PMC4431643
  • Kuhn, J. H., Andersen, K. G., Baize, S., Bao, Y., Bavari, S., Berthet, N., Blinkova, O., Brister, J. R., Clawson, A. N., Fair, J., Gabriel, M., Garry, R. F., et al. Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014 Viruses-Basel  2014 6:4760-4799  DOI:10.3390/v6114760  PMID:25421896  PMCID:PMC4246247
  • Grossman, S. R., Andersen, K. G., Shlyakhter, I., Tabrizi, S., Winnicki, S., Yen, A., Park, D. J., Griesemer, D., Karlsson, E. K., Wong, S. H., Cabili, M., Adegbola, R. A., et al. Identifying recent adaptations in large-scale genomic data Cell  2013 152:703-713  DOI:10.1016/j.cell.2013.01.035  PMID:23415221  PMCID:PMC3674781
  • Dharia, N. V., Sidhu, A. B. S., Cassera, M. B., Westenberger, S. J., Bopp, S. E. R., Eastman, R. T., Plouffe, D., Batalov, S., Park, D. J., Volkman, S. K., Wirth, D. F., Zhou, Y. Y., et al. Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in plasmodium falciparum Genome Biology  2009 10:R21  DOI:10.1186/gb-2009-10-2-r21  PMID:19216790  PMCID:PMC2688282