articles
- Enhanced in-Source Fragmentation Annotation Enables Novel Data Independent Acquisition and Autonomous METLIN Molecular Identification. 92:6051-6059. 2020
- EThcD and 213 nm UVPD for top-down analysis of bovine seminal plasma proteoforms on electrophoretic and chromatographic time frames. 92:2979-2987. 2020
- Improving proteomics data reproducibility with a dual-search strategy. 92:1697-1701. 2020
- Comparative Analysis of Cleavage Specificities of Immobilized Porcine Pepsin and Nepenthesin II under Hydrogen/Deuterium Exchange Conditions. 92:11018-11028. 2020
- Autonomous METLIN-guided in-source fragment annotation for untargeted metabolomics. 91:3246-3253. 2019
- Residue-specific conformational heterogeneity of proline-rich sequences uncovered via infrared spectroscopy. 90:14355-14362. 2018
- Reply to comment on METLIN: A technology platform for identifying knowns and unknowns. 90:13128-13129. 2018
- Epi-detected hyperspectral stimulated raman scattering microscopy for label-free molecular subtyping of glioblastomas. 90:10249-10255. 2018
- Autonomous multimodal metabolomics data integration for comprehensive pathway analysis and systems biology. 90:8396-8403. 2018
- Faster protocol for endogenous fatty acid esters of hydroxy fatty acid (FAHFA) measurements. 90:5358-5365. 2018
- METLIN: A technology platform for identifying knowns and unknowns. 90:3156-3164. 2018
- Correlative light-electron microscopy of lipid-encapsulated Fluorescent nanodiamonds for nanometric localization of cell surface antigens. 90:1566-1571. 2018
- Annotation: A computational solution for streamlining metabolomics analysis. 90:480-489. 2018
- Integrated, continuous emulsion creamer. 89:13227-13234. 2017
- Exposome-scale investigations guided by global metabolomics, pathway analysis, and cognitive computing. 89:11505-11513. 2017
- Morphology-driven control of metabolite selectivity using nanostructure-initiator mass spectrometry. 89:6521-6526. 2017
- Evaluation of p-(C-13,N-15-cyano)phenylalanine as an extended time scale 2D IR probe of proteins. 89:5254-5260. 2017
- Data streaming for metabolomics: accelerating data processing and analysis from days to minutes. 89:1254-1259. 2017
- Aqueous two-phase system rehydration of antibody-polymer microarrays enables convenient compartmentalized multiplex immunoassays. 88:11328-11334. 2016
- Smartphone analytics: mobilizing the lab into the cloud for omicscale analyses. 88:9753-9758. 2016
- Profiling reactive metabolites via chemical trapping and targeted mass spectrometry. 88:6658-6661. 2016
- Site-specific characterization of cytochrome P450cam conformations by infrared spectroscopy. 88:6598-6606. 2016
- Two-site evaluation of the repeatability and precision of an automated dual-column hydrogen/deuterium exchange mass spectrometry platform. 88:6607-6614. 2016
- Improved identification and analysis of small open reading frame encoded polypeptides. 88:3967-3975. 2016
- Supramolecular affinity chromatography for methylation-targeted proteomics. 88:3697-3703. 2016
- hvSABR: photochemical dose-response bead screening in droplets. 88:2904-2911. 2016
- Discovery in droplets. 88:339. 2016
- Extracting accurate precursor information for tandem mass spectra by raw converter. 87:11361-11367. 2015
- Temperature Dependence of CN and SCN IR absorptions facilitates their interpretation and use as probes of proteins. 87:11561-11567. 2015
- Thermal degradation of small molecules: a global metabolomic investigation. 87:10935-10941. 2015
- Triomics analysis of imatinib-treated myeloma cells connects kinase inhibition to RNA processing and decreased lipid biosynthesis. 87:10995-11006. 2015
- Online analysis of single cyanobacteria and algae cells under nitrogen-limited conditions using aerosol time-of-flight mass spectrometry. 87:8039-8046. 2015
- Simultaneous quantification of methylated cytidine and adenosine in cellular and tissue RNA by Nano-Flow liquid chromatography-tandem mass spectrometry coupled with the stable isotope-dilution method. 87:7653-7659. 2015
- When good intentions go awry: modification of a recombinant monoclonal antibody in chemically Defined Cell Culture by Xylosone, an Oxidative Product of Ascorbic Acid. 87:7529-7534. 2015
- Efficient mapping of sulfated glycotopes by negative ion mode nanoLC-MS/MS-based sulfoglycomic analysis of permethylated glycans. 87:6380-6388. 2015
- Differential isotopic enrichment to facilitate characterization of asymmetric multimeric proteins using hydrogen/deuterium exchange mass spectrometry. 87:4015-4022. 2015
- Autonomous metabolomics for rapid metabolite identification in global profiling. 87:884-891. 2015
- Bioinformatics: the next frontier of metabolomics. 87:147-156. 2015
- Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale. 86:11006-11012. 2014
- isoMETLIN: a database for isotope-based metabolomics. 86:9358-9361. 2014
- Discovery of a chemical modification by citric acid in a recombinant monoclonal antibody. 86:8932-8936. 2014
- Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. 86:6931-6939. 2014
- Rapid enumeration of phage in monodisperse emulsions. 86:5642-5648. 2014
- Discovery and characterization of a photo-oxidative histidine-histidine cross-link in IgG1 antibody utilizing (18)O-labeling and mass spectrometry. 86:4940-4948. 2014
- Microfluidic bead suspension hopper. 86:5039-5044. 2014
- Label-free direct visual analysis of hydrolytic enzyme activity using aqueous two-phase system droplet phase transitions. 86:4052-4057. 2014
- Phosphoproteomics. 86:1313. 2014
- Arginine modifications by methylglyoxal: discovery in a recombinant monoclonal antibody and contribution to acidic species. 85:11401-11409. 2013
- Quantitative proteomics. 85:8881. 2013
- BAD-lectins: boronic acid-decorated lectins with enhanced binding affinity for the selective enrichment of glycoproteins. 85:8268-8276. 2013
- Preprogrammed, parallel on-chip immunoassay using system-level capillarity control. 85:6902-6907. 2013
- Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism. 85:6876-6884. 2013
- Discovery of undefined protein cross-linking chemistry: a comprehensive methodology utilizing 18-O-labeling and mass spectrometry. 85:5900-5908. 2013
- Microfluidic amperometric sensor for analysis of nitric oxide in whole blood. 85:6066-6072. 2013
- Microscale determination of aqueous two phase system binodals by droplet dehydration in oil. 85:5213-5218. 2013
- Toward implementation of quorum sensing autoinducers as biomarkers for infectious disease states. 85:3355-62. 2013
- Integrated proteomic analysis of major isoaspartyl-containing proteins in the urine of wild type and protein L-isoaspartate O-methyltransferase-deficient mice. 85:2423-2430. 2013
- A view from above: Cloud plots to visualize global metabolomic data. 85:798-804. 2013
- Top down proteomics. 85:6151. 2013
- Improving the comprehensiveness and sensitivity of sheath less capillary electrophoresis-tandem mass spectrometry for proteomic analysis. 84:8505-8513. 2012
- XCMS Online: a web-based platform to process untargeted metabolomic data. 84:5035-5039. 2012
- Constant flow-driven microfluidic oscillator for different duty cycles. 84:1152-1156. 2012
- Protein isoaspartate methyltransferase-mediated 18-O-labeling of isoaspartic acid for mass spectrometry analysis. 84:1056-1062. 2012
- Iron oxide nanomatrix facilitating metal ionization in matrix-assisted laser desorption/ionization mass spectrometry. 83:9337-9343. 2011
- Viral Quantitative Capillary Electrophoresis for Counting Intact Viruses. 83:5431-5435. 2011
- Expanding coverage of the metabolome for global metabolite profiling. 83:2152-2161. 2011
- Characterization of differences between blood sample matrices in untargeted metabolomics. 83:1040-1047. 2011
- metaXCMS: second-order analysis of untargeted metabolomics data. 83:696-700. 2011
- Nanostructure-initiator mass spectrometry metabolite analysis and imaging. 83:2-7. 2011
- Multiplexed spectral signature detection for microfluidic color-coded bioparticle flow. 82:9506-9512. 2010
- Analysis of isoaspartic acid by selective proteolysis with Asp-N and electron transfer dissociation mass spectrometry. 82:7485-7491. 2010
- Native capillary isoelectric focusing for the separation of protein complex isoforms and subcomplexes. 82:6643-6651. 2010
- Quantitation of the ribosomal protein autoregulatory network using mass spectrometry. 82:5038-5045. 2010
- Combined immunocapture and laser desorption/ionization mass spectrometry on porous silicon. 82:4201-4208. 2010
- Patterned electrode-based amperometric gas sensor for direct nitric oxide detection within microfluidic devices. 82:3300-3305. 2010
- Fabrication of two-layered channel system with embedded electrodes to measure resistance across epithelial and endothelial barriers. 82:2505-2511. 2010
- Development of an aptamer beacon for detection of interferon-gamma. 82:1851-1857. 2010
- Dynamics of the beta(2)-adrenergic g-protein coupled receptor revealed by hydrogen-deuterium exchange. 82:1100-1108. 2010
- Incorporation of the fluorescent ribonucleotide analogue tCTP by T7 RNA polymerase. 82:1082-1089. 2010
- Nonlinear optical imaging of integral membrane protein crystals in lipidic mesophases. 82:491-497. 2010
- Detection of carbohydrates and steroids by cation-enhanced nanostructure-initiator mass spectrometry (NIMS) for biofluid analysis and tissue imaging. 82:121-128. 2010
- Chemical methods for the detection of protein N-homocysteinylation via selective reactions with aldehydes. 81:9065-9071. 2009
- Fabrication of oriented antibody-conjugated magnetic nanoprobes and their immunoaffinity application. 81:8774-8782. 2009
- High density labeling of polymerase chain reaction products with the fluorescent base analogue tCo. 81:9079-9085. 2009
- Variability analysis of human plasma and cerebral spinal fluid reveals statistical significance of changes in mass spectrometry-based metabolomics data. 81:8538-8544. 2009
- Iron oxide/gold core/shell nanoparticles for ultrasensitive detection of carbohydrate-protein interactions. 81:7750-7756. 2009
- High-resolution temperature-concentration diagram of α-synuclein conformation obtained from a single Förster resonance energy transfer image in a microfluidic device. 81:6929-6935. 2009
- Measurement of monovalent and polyvalent carbohydrate-lectin binding by back-scattering interferometry. 81:4889-4897. 2009
- Multiplex charge-transfer interactions between quantum dots and peptide-bridged ruthenium complexes. 81:4831-4839. 2009
- Hard top soft bottom microfluidic devices for cell culture and chemical analysis. 81:3714-3722. 2009
- Nanostructure initiator mass spectrometry: Tissue imaging and direct biofluid analysis. 81:2969-2975. 2009
- Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra. 81:1996-2003. 2009
- Gas chromatographic separation of isotopic molecules using a cavitand-impregnated ionic liquid stationary phase. 81:1244-1254. 2009
- Quantitative ESI-TOF analysis of macromolecular assembly kinetics. 80:9379-9386. 2008
- Comparisons of mass spectrometry compatible surfactants for global analysis of the mammalian brain proteome. 80:8694-8701. 2008
- Multidimensional lc separations in shotgun proteomics. 80:7187-7193. 2008
- Multiplexed immunoassay: quantitation and profiling of serum biomarkers using magnetic nanoprobes and MALDI-TOF MS. 80:6159-6167. 2008
- XCMS2: Processing tandem mass spectrometry data for metabolite identification and structural characterization. 80:6382-6389. 2008
- Electromechanical properties of pressure-actuated poly(dimethylsiloxane) microfluidic push-down valves. 80:6110-6113. 2008
- Biarsenical-tetracysteine motif as a fluorescent tag for detection in capillary electrophoresis. 80:5358-5366. 2008
- Desorption ionization of biomolecules on metals. 80:5203-5210. 2008
- Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution. 80:4906-4917. 2008
- Chemo-enzymatic detection of protein isoaspartate using protein Isoaspartate methyltransferase and hydrazine trapping. 80:3882-3889. 2008
- Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data. 80:2018-2025. 2008
- Partial acetylation of lysine residues improves intraprotein cross-linking. 80:951-960. 2008
- Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics. 80:421-429. 2008
- RCADiA: simple automation platform for comparative multidimensional protein identification technology. 79:6410-6418. 2007
- Optimizing TiO2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry. 79:4666-4673. 2007
- Shotgun analysis of integral membrane proteins facilitated by elevated temperature. 79:4613-4620. 2007
- Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides. 79:3623-3634. 2007
- Functionalized magnetic nanoparticles for small-molecule isolation, identification, and quantification. 79:3401-3408. 2007
- Leakage-free bonding of porous membranes into layered microfluidic array systems. 79:3504-3508. 2007
- Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer. 79:3056-3064. 2007
- Automatic validation of phosphopeptide identifications from tandem mass spectra. 79:1301-1310. 2007
- Gravity-driven microfluidic particle sorting device with hydrodynamic separation amplification. 79:1369-1376. 2007
- Characterization and resolution of evaporation-mediated osmolality shifts that constrain microfluidic cell culture in poly(dimethylsiloxane) devices. 79:1126-1134. 2007
- Microfluidic serial dilution circuit. 78:7522-7527. 2006
- Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples. 78:5109-5118. 2006
- Nonlinear data alignment for uplc-ms and hplc-ms based metabolomics: Quantitative analysis of endogenous and exogenous metabolites in human serum. 78:3289-3295. 2006
- Application of capture-recapture models to estimation of protein count in MudPIT experiments. 78:3203-3207. 2006
- Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra. 78:1921-1929. 2006
- Probing protein ligand interactions by automated hydrogen/deuterium exchange mass spectrometry. 78:1005-1014. 2006
- Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry. 78:743-752. 2006
- Xcms: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. 78:779-787. 2006
- Performance of a linear ion trap-Orbitrap hybrid for peptide analysis. 78:493-500. 2006
- Central limit theorem as an approximation for intensity-based scoring function. 78:89-95. 2006
- Surfactant-enhanced desorption/ionization on silicon mass spectrometry. 78:272-278. 2006
- Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides. 77:7646-7653. 2005
- Combined top-down and bottom-up mass spectrometric approach to characterization of biomarkers for renal disease. 77:7163-7171. 2005
- Nanoprobe-based affinity mass spectrometry for selected protein profiling in human plasma. 77:5990-5997. 2005
- Computer-controlled microcirculatory support system for endothelial cell culture and shearing. 77:3993-3999. 2005
- Desorption/ionization on silicon nanowires. 77:1641-1646. 2005
- Sparsely cross-linked "nanogel" matrixes as fluid, mechanically stabilized polymer networks for high-throughput microchannel DNA sequencing. 76:5249-5256. 2004
- Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. 76:4951-4959. 2004
- High sensitivity and analyte capture with desorption/ionization mass spectrometry on silylated porous silicon. 76:4484-4489. 2004
- A model for random sampling and estimation of relative protein abundance in shotgun proteomics. 76:4193-4201. 2004
- Impact of ion trap tandem mass spectra variability on the identification of peptides. 76:2928-2937. 2004
- Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases. 76:1664-1671. 2004
- Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides. 76:1243-1248. 2004
- A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. 75:6912-6921. 2003
- GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model. 75:6415-6421. 2003
- Integrated hydrogenated amorphous Si photodiode detector for microfluidic bioanalytical devices. 75:5300-5305. 2003
- Quantitative analysis with desorption/ionization on silicon mass spectrometry using electrospray deposition. 75:5475-5479. 2003
- Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology. 75:5054-5061. 2003
- A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases. 75:3792-3798. 2003
- Combined electron capture and infrared multiphoton dissociation for multistage ms/ms in a fourier transform ion cyclotron resonance mass spectrometer. 75:3256-3262. 2003
- Desorption/ionization on silicon time-of-flight/time-of-flight mass spectrometry. 75:2504-2506. 2003
- Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility. 75:2470-2477. 2003
- Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra. 75:1963-1971. 2003
- Passively driven integrated microfluidic system for separation of motile sperm. 75:1671-1675. 2003
- Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides. 75:1155-1163. 2003
- Effect of signal interference from dosing excipients on pharmacokinetic screening of drug candidates by liquid chromatography/mass spectrometry. 74:6305-6313. 2002
- Probability-based validation of protein identifications using a modified SEQUEST algorithm. 74:5593-5599. 2002
- Microchip bioprocessor for integrated nanovolume sample purification and DNA sequencing. 74:5092-5098. 2002
- Automated affinity capture-release of biotin-containing conjugates using a lab-on-valve apparatus coupled to UV/visible and electrospray ionization mass spectrometry. 74:4702-4708. 2002
- Processing complex mixtures of intact proteins for direct analysis by mass spectrometry. 74:2923-2929. 2002
- Analysis of quantitative proteomic data generated via multidimensional protein identification technology. 74:1650-1657. 2002
- Improvement in the apparent mass resolution of oligonucleotides by using 12C/14N-enriched samples. 74:226-231. 2002
- An automated multidimensional protein identification technology for shotgun proteomics. 73:5683-5690. 2001
- Porous silicon as a versatile platform for laser desorption/ionization mass spectrometry. 73:612-619. 2001
- MS for identification of single nucleotide polymorphisms and MS/MS for discrimination of isomeric PCR products. 72:4033-4040. 2000
- Equilibrium and kinetic measurements of muscarinic receptor antagonism on living cells using bead injection spectroscopy. 72:3109-3115. 2000
- Turn geometry for minimizing band broadening in microfabricated capillary electrophoresis channels. 72:3030-3037. 2000
- Amperometric detection of escherichia coli heat labile enterotoxin by redox diacetylenic vesicles on a sol-gel thin film electrode. 72:1611-1617. 2000
- Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry. 72:757-763. 2000
- Detection of oxygen consumption of cultured adherent cells by bead injection spectroscopy. 71:5248-5252. 1999
- Identification of proteins in complexes by solid phase microextraction multistep elution capillary electrophoresis tandem mass spectrometry. 71:2270-2278. 1999
- Nanoelectrospray mass spectrometry and precursor ion monitoring for quantitative steroid analysis and attomole sensitivity. 71:2358-2363. 1999
- Cellular applications of a sensitive and selective fiber optic nitric oxide biosensor based on a dye-labeled heme domain of soluble guanylate cyclase. 71:2071-2075. 1999
- Hydrodynamics and mass transfer of the coaxial jet mixer in flow injection analysis. 71:2199-2204. 1999
- From flow injection to bead injection. 71:257A-263A. 1999
- A flow injection renewable surface technique for cell-based drug discovery functional assays. 71:1160-1166. 1999
- Optimization of high-speed DNA sequencing on microfabricated capillary electrophoresis channels. 71:566-573. 1999
- Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis. 70:3557-3565. 1998
- An automated maldi mass spectrometry approach for optimizing cyclosporin extraction and quantitation. 69:3767-3771. 1997
- Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level. 69:767-776. 1997
- Mining genomes with MS. 68:534A-540A. 1996
- Mixture analysis using a quadrupole mass filter quadrupole ion trap mass spectrometer. 68:659-667. 1996
- Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. 67:3202-3210. 1995
- A coaxial jet mixer for rapid kinetic analysis in flow injection and flow injection cytometry. 67:2743-2749. 1995
- Characterization of the complexity of small-molecule libraries by electrospray ionization mass spectrometry. 67:2906-2915. 1995
- Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. 67:1426-1436. 1995
- Molecular-biology at atomic resolution. The structure of an insect virus and its functional implications. 61:1341A-1350A. 1989
- Tandem quadrupole-Fourier transform mass spectrometry of oligopeptides. 57:2728-2733. 1985
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