recent publications

• academic article

  • Gerald, J. N. F., Carlson, A. L., Smith, E., Maloof, J. N., Weigel, D., Chory, J., Borevitz, J. O., Swanson, R. J. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating Plant Physiology  2014 165:175-185  DOI:10.1104/pp.113.233213  PMID:24623850  PMCID:PMC4012578
  • Atwell, S., Huang, Y. S., Vilhjalmsson, B. J., Willems, G., Horton, M., Li, Y., Meng, D., Platt, A., Tarone, A. M., Hu, T. T., Jiang, R., Muliyati, N. W., et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines Nature  2010 465:627-631  DOI:10.1038/nature08800  PMID:20336072  PMCID:PMC3023908
  • Todesco, M., Balasubramanian, S., Hu, T. T., Traw, M. B., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, C., Lanz, C., Laitinen, R. A. E., Huang, Y., et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana Nature  2010 465:632-U129  DOI:10.1038/nature09083  PMID:20520716  PMCID:PMC3055268
  • Schwartz, C., Balasubramanian, S., Warthmann, N., Michael, T. P., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, J. N., Borevitz, J. O., Chory, J., Weigel, D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana Genetics  2009 183:723-732  DOI:10.1534/genetics.109.104984  PMID:19652183  PMCID:PMC2766330
  • Balasubramanian, S., Schwartz, C., Singh, A., Warthmann, N., Kim, M. C., Maloof, J. N., Loudet, O., Trainer, G. T., Dabi, T., Borevitz, J. O., Chory, J., Weigel, D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines PLoS One  2009 4  DOI:10.1371/journal.pone.0004318  PMID:19183806  PMCID:PMC2629843
  • Williams, R., Lim, J. E., Harr, B., Wang, C., Walters, R., Distler, M. G., Teschke, M., Wu, C. L., Wiltshire, T., Su, A. I., Sokoloff, G., Tarantino, L. M., et al. A common and unstable copy number variant is associated with differences in glo1 expression and anxiety-like behavior PLoS One  2009 4:e4649  DOI:10.1371/journal.pone.0004649  PMID:19266052  PMCID:PMC2650792
  • Hazen, S. P., Naef, F., Quisel, T., Gendron, J. M., Chen, H. M., Ecker, J. R., Borevitz, J. O., Kay, S. A. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays Genome Biology  2009 10:R17  DOI:10.1186/gb-2009-10-2-r17  PMID:19210792  PMCID:PMC2688271
  • Filiault, D. L., Wessinger, C. A., Dinneny, J. R., Lutes, J., Borevitz, J. O., Weigel, D., Chory, J., Maloof, J. N. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light Proceedings of the National Academy of Sciences of the United States of America  2008 105:3157-3162  DOI:10.1073/pnas.0712174105  PMID:18287016  PMCID:PMC2268601
  • Borevitz, J. O., Hazen, S. P., Michael, T. P., Morris, G. P., Baxter, I. R., Hu, T. T., Chen, H., Werner, J. D., Nordborg, M., Salf, D. E., Kay, S. A., Chory, J., et al. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana Proceedings of the National Academy of Sciences of the United States of America  2007 104:12057-12062  DOI:10.1073/pnas.0705323104  PMID:17626786  PMCID:PMC1914337
  • Kidgell, C., Volkman, S. K., Daily, J., Borevitz, J. O., Plouffe, D., Zhou, Y. Y., Johnson, J. R., Le Roch, K. G., Sarr, O., Ndir, O., Mboup, S., Batalov, S., et al. A systematic map of genetic variation in plasmodium falciparum PLoS Pathogens  2006 2:562-577  DOI:10.1371/journal.ppat.0020057  PMID:16789840  PMCID:PMC1480597
  • Werner, J. D., Borevitz, J. O., Uhlenhaut, N. H., Ecker, J. R., Chory, J., Weigel, D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions Genetics  2005 170:1197-1207  DOI:10.1534/genetics.104.036533  PMID:15911588  PMCID:PMC1451178
  • Werner, J. D., Borevitz, J. O., Warthmann, N., Trainer, G. T., Ecker, J. R., Chory, J., Weigel, D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation Proceedings of the National Academy of Sciences of the United States of America  2005 102:2460-2465  DOI:10.1073/pnas.0409474102  PMID:15695584  PMCID:PMC548991
  • Hazen, S. P., Schultz, T. F., Pruneda-Paz, J. L., Borevitz, J. O., Ecker, J. R., Kay, S. A. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms Proceedings of the National Academy of Sciences of the United States of America  2005 102:10387-10392  DOI:10.1073/pnas.0503029102  PMID:16006522  PMCID:PMC1177380
  • Hazen, S. P., Borevitz, J. O., Harmon, F. G., Pruneda-Paz, J. L., Schultz, T. F., Yanovsky, M. J., Liljegren, S. J., Ecker, J. R., Kay, S. A. Rapid array mapping of circadian clock and developmental mutations in Arabidopsis Plant Physiology  2005 138:990-997  DOI:10.1104/pp.105.061408  PMID:15908595  PMCID:PMC1150413
  • Borevitz, J. O., Chory, J. Genomics tools for QTL analysis and gene discovery Current Opinion in Plant Biology  2004 7:132-136  DOI:10.1016/j.pbi.2004.01.011  PMID:15003212
  • Borevitz, J. O., Liang, D., Plouffe, D., Chang, H. S., Zhu, T., Weigel, D., Berry, C. C., Winzeler, E., Chory, J. Large-scale identification of single-feature polymorphisms in complex genomes Genome Research  2003 13:513-523  DOI:10.1101/gr.541303  PMID:12618383  PMCID:PMC430246
  • Borevitz, J. O., Maloof, J. N., Lutes, J., Dabi, T., Redfern, J. L., Trainer, G. T., Werner, J. D., Asami, T., Berry, C. C., Weigel, D., Chory, J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana Genetics  2002 160:683-696  PMID:11861571  PMCID:PMC1461994
  • Nordborg, M., Borevitz, J. O., Bergelson, J., Berry, C. C., Chory, J., Hagenblad, J., Kreitman, M., Maloof, J. N., Noyes, T., Oefner, P. J., Stahl, E. A., Weigel, D. The extent of linkage disequilibrium in Arabidopsis thaliana Nature Genetics  2002 30:190-193  DOI:10.1038/ng813  PMID:11780140
  • Maloof, J. N., Borevitz, J. O., Dabi, T., Lutes, J., Nehring, R. B., Redfern, J. L., Trainer, G. T., Wilson, J. M., Asami, T., Berry, C. C., Weigel, D., Chory, J. Natural variation in light sensitivity of Arabidopsis Nature Genetics  2001 29:441-446  DOI:10.1038/ng777  PMID:11726931
  • Weigel, D., Ahn, J. H., Blazquez, M. A., Borevitz, J. O., Christensen, S. K., Fankhauser, C., Ferrandiz, C., Kardailsky, I., Malancharuvil, E. J., Neff, M. M., Nguyen, J. T., Sato, S., et al. Activation tagging in Arabidopsis Plant Physiology  2000 122:1003-1013  DOI:10.1104/pp.122.4.1003
  • Maloof, J. N., Borevitz, J. O., Weigel, D., Chory, J. Natural variation in phytochrome signaling Seminars in Cell & Developmental Biology  2000 11:523-530  DOI:10.1006/scdb.2000.0198  PMID:11145882