Constructing lattice models of protein chains with side groups

Academic Article

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Overview

authors

• Reva, B. A.
• Rykunov, D. S.
• Olson, Arthur
• Finkelstein, A. V.

publication date

• 1995

journal

• Journal of Computational Biology  Journal

abstract

• An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.

subject areas

• Algorithms
• Animals
• Models, Molecular
• Molecular Structure
• Protein Conformation
• Protein Structure, Secondary
• Proteins

Identity

International Standard Serial Number (ISSN)

• 1066-5277 (Print) 1066-5277 (Linking)

Digital Object Identifier (DOI)

• 10.1089/cmb.1995.2.527

PubMed ID

• 8634904

Additional Document Info

start page

• 527

end page

• 535

volume

• 2

issue

• 4