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Data to knowledge: how to get meaning from your result

Academic Article
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Overview

authors

  • Berman, H. M.
  • Gabanyi, M. J.
  • Groom, C. R.
  • Johnson Jr., John
  • Murshudov, G. N.
  • Nicholls, R. A.
  • Reddy, Vijay
  • Schwede, T.
  • Zimmerman, M. D.
  • Westbrook, J.
  • Minor, W.

publication date

  • January 2015

journal

  • IUCrJ  Journal

abstract

  • Structural and functional studies require the development of sophisticated 'Big Data' technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, evaluation of homology modeling by the Protein Model Portal, the ProSMART tool for conformation-independent structure comparison, the LabDB 'super' laboratory information management system and the Cambridge Structural Database. These techniques and technologies represent important tools for the transformation of crystallographic data into knowledge and information, in an effort to address the problem of non-reproducibility of experimental results.
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Research

keywords

  • big data
  • data bases
  • data deposition
  • knowledge bases
  • meaning from data
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Identity

International Standard Serial Number (ISSN)

  • 2052-2525

Digital Object Identifier (DOI)

  • 10.1107/s2052252514023306

PubMed ID

  • 25610627
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Additional Document Info

start page

  • 45

end page

  • 58

volume

  • 2

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