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NISC Comparative Sequencing Program

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Publications

recent publications

  • academic article

    • Bonsignori, M., Zhou, T., Sheng, Z., Chen, L., Gao, F., Joyce, M. G., Ozorowski, G., Chuang, G. Y., Schramm, C. A., Wiehe, K., Alam, S. M., Bradley, T., et al. Maturation pathway from germline to broad HIV-1 neutralizer of a CD4-mimic antibody Cell  2016 165:449-463  DOI:10.1016/j.cell.2016.02.022  PMID:26949186  PMCID:PMC4826291
    • Doria-Rose, N. A., Schramm, C. A., Gorman, J., Moore, P. L., Bhiman, J. N., DeKosky, B. J., Ernandes, M. J., Georgiev, I. S., Kim, H. J., Pancera, M., Staupe, R. P., Altae-Tran, H. R., et al. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies Nature  2014 509:55-62  DOI:10.1038/nature13036  PMID:24590074  PMCID:PMC4395007
    • Zhu, J., Wu, X., Zhang, B., McKee, K., O'Dell, S., Soto, C., Zhou, T., Casazza, J. P., NISC Comparative Sequencing Program, Mullikin, J. C., Kwong, P. D., Mascola, J. R., et al. De novo identification of VRC01 class HIV-1-neutralizing antibodies by next-generation sequencing of B-cell transcripts Proceedings of the National Academy of Sciences of the United States of America  2013 110:E4088-E4097  DOI:10.1073/pnas.1306262110  PMID:24106303  PMCID:PMC3808619
    • Zhou, T., Zhu, J., Wu, X., Moquin, S., Zhang, B., Acharya, P., Georgiev, I. S., Altae-Tran, H. R., Chuang, G. Y., Joyce, M. G., Kwon, Y. D., Longo, N. S., et al. Multidonor analysis reveals structural elements, genetic determinants, and maturation pathway for HIV-1 neutralization by VRC01-class antibodies Immunity  2013 39:245-258  DOI:10.1016/j.immuni.2013.04.012  PMID:23911655  PMCID:PMC3985390
    • Liao, H. X., Lynch, R., Zhou, T., Gao, F., Alam, S. M., Boyd, S. D., Fire, A. Z., Roskin, K. M., Schramm, C. A., Zhang, Z., Zhu, J., Shapiro, L., et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus Nature  2013 496:469-476  DOI:10.1038/nature12053  PMID:23552890  PMCID:PMC3637846
    • Zhu, J., Ofek, G., Yang, Y. P., Zhang, B. S., Louder, M. K., Lu, G., McKee, K., Pancera, M., Skinner, J., Zhang, Z. H., Parks, R., Eudailey, J., et al. Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains Proceedings of the National Academy of Sciences of the United States of America  2013 110:6470-6475  DOI:10.1073/pnas.1219320110  PMID:23536288  PMCID:PMC3631616
    • Zhu, J., O'Dell, S., Ofek, G., Pancera, M., Wu, X., Zhang, B., Zhang, Z., NISC Comparative Sequencing Program, Mullikin, J. C., Simek, M., Burton, D. R., Koff, W. C., et al. Somatic populations of PGT135-137 HIV-1-neutralizing antibodies identified by 454 pyrosequencing and bioinformatics Frontiers in Microbiology  2012 3:315  DOI:10.3389/fmicb.2012.00315  PMID:23024643  PMCID:PMC3441199
    • Wu, X. L., Zhou, T. Q., Zhu, J., Zhang, B. S., Georgiev, I., Wang, C., Chen, X. J., Longo, N. S., Louder, M., McKee, K., O'Dell, S., Perfetto, S., et al. Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing Science  2011 333:1593-1602  DOI:10.1126/science.1207532  PMID:21835983  PMCID:PMC3516815

recent publications

  • academic article

    • Bonsignori, M., Zhou, T., Sheng, Z., Chen, L., Gao, F., Joyce, M. G., Ozorowski, G., Chuang, G. Y., Schramm, C. A., Wiehe, K., Alam, S. M., Bradley, T., et al. Maturation pathway from germline to broad HIV-1 neutralizer of a CD4-mimic antibody Cell  2016 165:449-463  DOI:10.1016/j.cell.2016.02.022  PMID:26949186  PMCID:PMC4826291
    • Doria-Rose, N. A., Schramm, C. A., Gorman, J., Moore, P. L., Bhiman, J. N., DeKosky, B. J., Ernandes, M. J., Georgiev, I. S., Kim, H. J., Pancera, M., Staupe, R. P., Altae-Tran, H. R., et al. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies Nature  2014 509:55-62  DOI:10.1038/nature13036  PMID:24590074  PMCID:PMC4395007
    • Zhu, J., Wu, X., Zhang, B., McKee, K., O'Dell, S., Soto, C., Zhou, T., Casazza, J. P., NISC Comparative Sequencing Program, Mullikin, J. C., Kwong, P. D., Mascola, J. R., et al. De novo identification of VRC01 class HIV-1-neutralizing antibodies by next-generation sequencing of B-cell transcripts Proceedings of the National Academy of Sciences of the United States of America  2013 110:E4088-E4097  DOI:10.1073/pnas.1306262110  PMID:24106303  PMCID:PMC3808619
    • Zhou, T., Zhu, J., Wu, X., Moquin, S., Zhang, B., Acharya, P., Georgiev, I. S., Altae-Tran, H. R., Chuang, G. Y., Joyce, M. G., Kwon, Y. D., Longo, N. S., et al. Multidonor analysis reveals structural elements, genetic determinants, and maturation pathway for HIV-1 neutralization by VRC01-class antibodies Immunity  2013 39:245-258  DOI:10.1016/j.immuni.2013.04.012  PMID:23911655  PMCID:PMC3985390
    • Liao, H. X., Lynch, R., Zhou, T., Gao, F., Alam, S. M., Boyd, S. D., Fire, A. Z., Roskin, K. M., Schramm, C. A., Zhang, Z., Zhu, J., Shapiro, L., et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus Nature  2013 496:469-476  DOI:10.1038/nature12053  PMID:23552890  PMCID:PMC3637846
    • Zhu, J., Ofek, G., Yang, Y. P., Zhang, B. S., Louder, M. K., Lu, G., McKee, K., Pancera, M., Skinner, J., Zhang, Z. H., Parks, R., Eudailey, J., et al. Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains Proceedings of the National Academy of Sciences of the United States of America  2013 110:6470-6475  DOI:10.1073/pnas.1219320110  PMID:23536288  PMCID:PMC3631616
    • Zhu, J., O'Dell, S., Ofek, G., Pancera, M., Wu, X., Zhang, B., Zhang, Z., NISC Comparative Sequencing Program, Mullikin, J. C., Simek, M., Burton, D. R., Koff, W. C., et al. Somatic populations of PGT135-137 HIV-1-neutralizing antibodies identified by 454 pyrosequencing and bioinformatics Frontiers in Microbiology  2012 3:315  DOI:10.3389/fmicb.2012.00315  PMID:23024643  PMCID:PMC3441199
    • Wu, X. L., Zhou, T. Q., Zhu, J., Zhang, B. S., Georgiev, I., Wang, C., Chen, X. J., Longo, N. S., Louder, M., McKee, K., O'Dell, S., Perfetto, S., et al. Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing Science  2011 333:1593-1602  DOI:10.1126/science.1207532  PMID:21835983  PMCID:PMC3516815

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