academic article

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• Aouri, M., Moradpour, D., Cavassini, M., Mercier, T., Buclin, T., Csajka, C., Telenti, A., Rauch, A., Decosterd, L. A. Multiplex liquid chromatography-tandem mass spectrometry assay for simultaneous therapeutic drug monitoring of ribavirin, boceprevir, and telaprevir Antimicrobial Agents and Chemotherapy  2013 57:3147-3158  DOI:10.1128/aac.00281-13  PMID:23629707  PMCID:PMC3697367
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• Aouri, M., Calmy, A., Hirschel, B., Telenti, A., Buclin, T., Cavassini, M., Rauch, A., Decosterd, L. A. A validated assay by liquid chromatography-tandem mass spectrometry for the simultaneous quantification of elvitegravir and rilpivirine in HIV positive patients Journal of Mass Spectrometry  2013 48:616-625  DOI:10.1002/jms.3200  PMID:23674286
• Ciuffi, A., Telenti, A. State of genomics and epigenomics research in the perspective of HIV cure Current Opinion in HIV and AIDS  2013 8:176-181  DOI:10.1097/COH.0b013e32835f7340  PMID:23426238
• Mohammadi, P., Desfarges, S., Bartha, I., Joos, B., Zangger, N., Munoz, M., Gunthard, H. F., Beerenwinkel, N., Telenti, A., Ciuffi, A. 24 hours in the life of HIV-1 in a T cell line PLoS Pathogens  2013 9  DOI:10.1371/journal.ppat.1003161  PMID:23382686  PMCID:PMC3561177
• Anagnostopoulos, A., Rotger, M., Aouri, M., Kuster, S. P., Telenti, A., Decosterd, L. A., Gunthard, H. F. Efavirenz intoxication due to a new CYP2B6 constellation Antiviral Therapy  2013 18:739-743  DOI:10.3851/imp2571  PMID:23640958
• McLaren, P. J., Fellay, J., Telenti, A. European genetic diversity and susceptibility to pathogens Human Heredity  2013 76:187-193  DOI:10.1159/000357758  PMID:24861863
• Fayet-Mello, A., Buclin, T., Guignard, N., Cruchon, S., Cavassini, M., Grawe, C., Gremlich, E., Popp, K. A., Schmid, F., Eap, C. B., Telenti, A., Biollaz, J., et al. Free and total plasma levels of lopinavir during pregnancy, at delivery and postpartum: implications for dosage adjustments in pregnant women Antiviral Therapy  2013 18:171-182  DOI:10.3851/imp2328  PMID:22914504
• Lubomirov, R., Arab-Alameddine, M., Rotger, M., Fayet-Mello, A., Martinez, R., Guidi, M., di Iulio, J., Cavassini, M., Gunthard, H. F., Furrer, H., Marzolini, C., Bernasconi, E., et al. Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals Pharmacogenetics and Genomics  2013 23:9-18  DOI:10.1097/FPC.0b013e32835ade82  PMID:23111422
• Thompson, M. A., Aberg, J. A., Hoy, J. F., Telenti, A., Benson, C., Cahn, P., Eron, J. J., Gunthard, H. F., Hammer, S. M., Reiss, P., Richman, D. D., Rizzardini, G., et al. Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel JAMA-Journal of the American Medical Association  2012 308:387-402  DOI:10.1001/jama.2012.7961  PMID:22820792
• Arab-Alameddine, M., Fayet-Mello, A., Lubomirov, R., Neely, M., di Iulio, J., Owen, A., Boffito, M., Cavassini, M., Gunthard, H. F., Rentsch, K., Buclin, T., Aouri, M., et al. Population pharmacokinetic analysis and pharmacogenetics of raltegravir in HIV-positive and healthy individuals Antimicrobial Agents and Chemotherapy  2012 56:2959-2966  DOI:10.1128/aac.05424-11  PMID:22371894  PMCID:PMC3370715
• Telenti, A., Johnson, W. E. Host genes important to HIV replication and evolution Cold Spring Harbor Perspectives in Medicine  2012 2  DOI:10.1101/cshperspect.a007203  PMID:22474614  PMCID:PMC3312401
• Izquierdo-Useros, N., Lorizate, M., Puertas, M. C., Rodriguez-Plata, M. T., Zangger, N., Erikson, E., Pino, M., Erkizia, I., Glass, B., Clotet, B., Keppler, O. T., Telenti, A., et al. Siglec-1 is a novel dendritic cell receptor that mediates HIV-1 trans-infection through recognition of viral membrane gangliosides PLoS Biology  2012 10  DOI:10.1371/journal.pbio.1001448  PMID:23271952  PMCID:PMC3525531
• Rahm, N., Telenti, A. The role of tripartite motif family members in mediating susceptibility to HIV-1 infection Current Opinion in HIV and AIDS  2012 7:180-186  DOI:10.1097/COH.0b013e32835048e1  PMID:22258502
• Pernas, M., Casado, C., Arcones, C., Llano, A., Sanchez-Merino, V., Mothe, B., Vicario, J. L., Grau, E., Ruiz, L., Sanchez, J., Telenti, A., Yuste, E., et al. Low-replicating viruses and strong anti-viral immune response associated with prolonged disease control in a superinfected HIV-1 LTNP elite controller PLoS One  2012 7  DOI:10.1371/journal.pone.0031928  PMID:22384103  PMCID:PMC3286446
• Zuercher, E., Butticaz, C., Wyniger, J., Martinez, R., Battegay, M., El Amari, E. B., Dang, T., Egger, J. F., Fehr, J., Mueller-Garamvogyi, E., Parini, A., Schaefer, S. C., et al. Genetic diversity of EBV-encoded LMP1 in the Swiss HIV Cohort Study and implication for NF-Κb activation PLoS One  2012 7  DOI:10.1371/journal.pone.0032168  PMID:22384168  PMCID:PMC3285206
• Laguette, N., Rahm, N., Sobhian, B., Chable-Bessia, C., Munch, J., Snoeck, J., Sauter, D., Switzer, W. M., Heneine, W., Kirchhoff, F., Delsuc, F., Telenti, A., et al. Evolutionary and functional analyses of the interaction between the myeloid restriction factor SAMHD1 and the lentiviral Vpx protein Cell Host & Microbe  2012 11:205-217  DOI:10.1016/j.chom.2012.01.007  PMID:22305291  PMCID:PMC3595996
• Glass, T. R., Rotger, M., Telenti, A., Decosterd, L., Csajka, C., Bucher, H. C., Gunthard, H. F., Rickenbach, M., Nicca, D., Hirschel, B., Bernasconi, E., Wandeler, G., et al. Determinants of sustained viral suppression in HIV-infected patients with self-reported poor adherence to antiretroviral therapy PLoS One  2012 7  DOI:10.1371/journal.pone.0029186  PMID:22235271  PMCID:PMC3250421
• Guidi, M., Arab-Alameddine, M., Rotger, M., Aouri, M., Telenti, A., Decosterd, L. A., Buclin, T., Csajka, C. Dosage optimization of treatments using population pharmacokinetic modeling and simulation Chimia  2012 66:291-295  DOI:10.2533/chimia.2012.291  PMID:22867538
• Vanasse, G. J., Jeong, J. Y., Tate, J., Bathulapalli, H., Anderson, D., Steen, H., Fleming, M., Mattocks, K., Telenti, A., Fellay, J., Justice, A. C., Berliner, N. A polymorphism in the leptin gene promoter is associated with anemia in patients with HIV disease Blood  2011 118:5401-5408  DOI:10.1182/blood-2011-06-362194  PMID:21926355  PMCID:PMC3217345
• Pelak, K., Need, A. C., Fellay, J., Shianna, K. V., Feng, S., Urban, T. J., Ge, D., De Luca, A., Martinez-Picado, J., Wolinsky, S. M., Martinson, J. J., Jamieson, B. D., et al. Copy Number Variation of KIR Genes Influences HIV-1 Control Plos Biology  2011 9  DOI:10.1371/journal.pbio.1001208  PMID:22140359  PMCID:PMC3226550
• Snoeck, J., Fellay, J., Bartha, I., Douek, D. C., Telenti, A. Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints Retrovirology  2011 8  DOI:10.1186/1742-4690-8-87  PMID:22044801  PMCID:PMC3229471
• Haas, D. W., Kuritzkes, D. R., Ritchie, M. D., Amur, S., Gage, B. F., Maartens, G., Masys, D., Fellay, J., Phillips, E., Ribaudo, H. J., Freedberg, K. A., Petropoulos, C., et al. Pharmacogenomics of HIV therapy: summary of a workshop sponsored by the National Institute of Allergy and Infectious Diseases HIV Clinical Trials  2011 12:277-285  DOI:10.1310/hct1205-277  PMID:22180526  PMCID:PMC3322423
• Lefebvre, G., Desfarges, S., Uyttebroeck, F., Munoz, M., Beerenwinkel, N., Rougemont, J., Telenti, A., Ciuffi, A. Analysis of HIV-1 expression level and sense of transcription by high-throughput sequencing of the infected cell Journal of Virology  2011 85:6205-6211  DOI:10.1128/jvi.00252-11  PMID:21507965  PMCID:PMC3126515
• Mello, A. F., Buclin, T., Franc, C., Colombo, S., Cruchon, S., Guignard, N., Biollaz, J., Telenti, A., Decosterd, L. A., Cavassini, M. Cell disposition of raltegravir and newer antiretrovirals in HIV-infected patients: high inter-individual variability in raltegravir cellular penetration Journal of Antimicrobial Chemotherapy  2011 66:1573-1581  DOI:10.1093/jac/dkr151  PMID:21508009
• Rotger, M., Dalmau, J., Rauch, A., McLaren, P., Bosinger, S. E., Martinez, R., Sandler, N. G., Roque, A., Liebner, J., Battegay, M., Bernasconi, E., Descombes, P., et al. Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque Journal of Clinical Investigation  2011 121:2391-2400  DOI:10.1172/jci45235  PMID:21555857  PMCID:PMC3104754
• Evangelou, E., Fellay, J., Colombo, S., Martinez-Picado, J., Obel, N., Goldstein, D. B., Telenti, A., Ioannidis, J. P. A. Impact of phenotype definition on genome-wide association signals: empirical evaluation in human immunodeficiency virus type 1 infection American Journal of Epidemiology  2011 173:1336-1342  DOI:10.1093/aje/kwr024  PMID:21490045  PMCID:PMC4806701
• Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., Greub, G. Lausannevirus, a giant amoebal virus encoding histone doublets Environmental Microbiology  2011 13:1454-1466  DOI:10.1111/j.1462-2920.2011.02446.x  PMID:21392201
• Arab-Alameddine, M., Decosterd, L. A., Buclin, T., Telenti, A., Csajka, C. Antiretroviral drug toxicity in relation to pharmacokinetics, metabolic profile and pharmacogenetics Expert Opinion on Drug Metabolism & Toxicology  2011 7:609-622  DOI:10.1517/17425255.2011.562891  PMID:21500966
• di Iulio, J., Ciuffi, A., Fitzmaurice, K., Kelleher, D., Rotger, M., Fellay, J., Martinez, R., Pulit, S., Furrer, H., Gunthard, H. F., Battegay, M., Bernasconi, E., et al. Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance Hepatology  2011 53:1446-1454  DOI:10.1002/hep.24263  PMID:21360716  PMCID:PMC3128709
• Rahm, N., Yap, M., Snoeck, J., Zoete, V., Munoz, M., Radespiel, U., Zimmermann, E., Michielin, O., Stoye, J. P., Ciuffi, A., Telenti, A. Unique spectrum of activity of prosimian TRIM5α against exogenous and endogenous retroviruses Journal of Virology  2011 85:4173-4183  DOI:10.1128/jvi.00075-11  PMID:21345948  PMCID:PMC3126249
• Kulkarni, S., Savan, R., Qi, Y., Gao, X., Yuki, Y., Bass, S. E., Martin, M. P., Hunt, P., Deeks, S. G., Telenti, A., Pereyra, F., Goldstein, D., et al. Differential microRNA regulation of HLA-C expression and its association with HIV control Nature  2011 472:495-498  DOI:10.1038/nature09914  PMID:21499264  PMCID:PMC3084326
• Buclin, T., Telenti, A., Perera, R., Csajka, C., Furrer, H., Aronson, J. K., Glasziou, P. P. Development and validation of decision rules to guide frequency of monitoring CD4 cell count in HIV-1 infection before starting antiretroviral therap PLoS One  2011 6  DOI:10.1371/journal.pone.0018578  PMID:21494630  PMCID:PMC3072996
• Ortiz, M., Poloni, E. S., Furrer, H., Kovari, H., Martinez, R., Arnedo, M., Elzi, L., Bernasconi, E., Vernazza, P., Hirschel, B., Cavassini, M., Ledergerber, B., et al. No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy Journal of Infectious Diseases  2011 203:620-624  DOI:10.1093/infdis/jiq106  PMID:21227914  PMCID:PMC3072732
• Vigneault, F., Woods, M., Buzon, M. J., Li, C., Pereyra, F., Crosby, S. D., Rychert, J., Church, G., Martinez-Picado, J., Rosenberg, E. S., Telenti, A., Yu, X. G., et al. Transcriptional profiling of CD4 T cells identifies distinct subgroups of HIV-1 elite controllers Journal of Virology  2011 85:3015-3019  DOI:10.1128/jvi.01846-10  PMID:21177805  PMCID:PMC3067917
• Bulliard, Y., Narvaiza, I., Bertero, A., Peddi, S., Rohrig, U. F., Ortiz, M., Zoete, V., Castro-Diaz, N., Turelli, P., Telenti, A., Michielin, O., Weitzman, M. D., et al. Structure-function analyses point to a polynucleotide-accommodating groove essential for APOBEC3A restriction activities Journal of Virology  2011 85:1765-1776  DOI:10.1128/jvi.01651-10  PMID:21123384  PMCID:PMC3028873
• Lubomirov, R., Colombo, S., di Iulio, J., Ledergerber, B., Martinez, R., Cavassini, M., Hirsche, B., Bernasconi, E., Elzi, L., Vernazza, P., Furrer, H., Gunthard, H. F., et al. Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study Journal of Infectious Diseases  2011 203:246-257  DOI:10.1093/infdis/jiq043  PMID:21288825  PMCID:PMC3071070
• Mello, A. F., Buclin, T., Decosterd, L. A., Delhumeau, C., di Lulio, J., Fleurent, A., Schneider, M. P., Cavassini, M., Telenti, A., Hirschel, B., Calmy, A. Successful efavirenz dose reduction guided by therapeutic drug monitoring Antiviral Therapy  2011 16:189-197  DOI:10.3851/imp1742  PMID:21447868
• Paust, S., Gill, H. S., Wang, B. Z., Flynn, M. P., Moseman, E. A., Senman, B., Szczepanik, M., Telenti, A., Askenase, P. W., Compans, R. W., von Andrian, U. H. Critical role for the chemokine receptor CXCR6 in NK cell-mediated antigen-specific memory of haptens and viruses Nature Immunology  2010 11:1127-U128  DOI:10.1038/ni.1953  PMID:20972432  PMCID:PMC2982944
• Telenti, A., McLaren, P. Genomic approaches to the study of HIV‐1 acquisition Journal of Infectious Diseases  2010 202:S382-S386  DOI:10.1086/655969  PMID:20887229
• Rotger, M., Gsponer, T., Martinez, R., Taffe, P., Elzi, L., Vernazza, P., Cavassini, M., Bernasconi, E., Hirschel, B., Furrer, H., Weber, R., Ledergerber, B., et al. Impact of single nucleotide polymorphisms and of clinical risk factors on new‐onset diabetes mellitus in HIV‐infected individuals Clinical Infectious Diseases  2010 51:1090-1098  DOI:10.1086/656630  PMID:20879858
• Schoeni-Affolter, F., Ledergerber, B., Rickenbach, M., Rudin, C., Gunthard, H. F., Telenti, A., Furrer, H., Yerly, S., Francioli, P. Cohort profile: the Swiss HIV Cohort study International Journal of Epidemiology  2010 39:1179-1189  DOI:10.1093/ije/dyp321  PMID:19948780
• Fellay, J., Shianna, K. V., Telenti, A., Goldstein, D. B. Host genetics and HIV-1: the final phase? PLoS Pathogens  2010 6  DOI:10.1371/journal.ppat.1001033  PMID:20976252  PMCID:PMC2954832
• Rohrbach, J., Robinson, N., Harcourt, G., Hammond, E., Gaudieri, S., Gorgievski, M., Telenti, A., Keiser, O., Gunthard, H. F., Hirschel, B., Hoffmann, M., Bernasconi, E., et al. Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy Gut  2010 59:1252-1258  DOI:10.1136/gut.2009.205971  PMID:20660698
• Alizon, S., von Wyl, V., Stadler, T., Kouyos, R. D., Yerly, S., Hirschel, B., Boni, J., Shah, C., Klimkait, T., Furrer, H., Rauch, A., Vernazza, P. L., et al. Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load PLoS Pathogens  2010 6  DOI:10.1371/journal.ppat.1001123  PMID:20941398  PMCID:PMC2947993
• Thompson, M. A., Aberg, J. A., Cahn, P., Montaner, J. S. G., Rizzardini, G., Telenti, A., Gatell, J. M., Gunthard, H. F., Hammer, S. M., Hirsch, M. S., Jacobsen, D. M., Reiss, P., et al. Antiretroviral treatment of adult HIV infection: 2010 recommendations of the International AIDS Society-USA panel JAMA-Journal of the American Medical Association  2010 304:321-333  DOI:10.1001/jama.2010.1004  PMID:20639566
• Specht, A., Telenti, A., Martinez, R., Fellay, J., Bailes, E., Evans, D. T., Carrington, M., Hahn, B. H., Goldstein, D. B., Kirchhoff, F. Counteraction of HLA-C-mediated immune control of HIV-1 by Nef Journal of Virology  2010 84:7300-7311  DOI:10.1128/jvi.00619-10  PMID:20463068  PMCID:PMC2898263
• Casado, C., Colombo, S., Rauch, A., Martinez, R., Gunthard, H. F., Garcia, S., Rodriguez, C., del Romero, J., Telenti, A., Lopez-Galindez, C. Host and viral genetic correlates of clinical definitions of HIV-1 disease progression PLoS One  2010 5  DOI:10.1371/journal.pone.0011079  PMID:20552027  PMCID:PMC2884031
• Lubomirov, R., di Iulio, J., Fayet, A., Colombo, S., Martinez, R., Marzolini, C., Furrer, H., Vernazza, P., Calmy, A., Cavassini, M., Ledergerber, B., Rentsch, K., et al. ADME pharmacogenetics: investigation of the pharmacokinetics of the antiretroviral agent lopinavir coformulated with ritonavir Pharmacogenetics and Genomics  2010 20:217-230  DOI:10.1097/FPC.0b013e328336eee4  PMID:20139798
• Tarr, P. E., Rotger, M., Telenti, A. Dyslipidemia in HIV-infected individuals: from pharmacogenetics to pharmacogenomics Pharmacogenomics  2010 11:587-594  DOI:10.2217/pgs.10.35  PMID:20350140
• Rauch, A., Kutalik, Z., Descombes, P., Cai, T., Di Iulio, J., Mueller, T., Bochud, M., Battegay, M., Bernasconi, E., Borovicka, J., Colombo, S., Cerny, A., et al. Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study Gastroenterology  2010 138:1338-1345  DOI:10.1053/j.gastro.2009.12.056  PMID:20060832
• Clerc, O., Colombo, S., Yerly, S., Telenti, A., Cavassini, M. HIV-1 elite controllers: Beware of super-infections Journal of Clinical Virology  2010 47:376-378  DOI:10.1016/j.jcv.2010.01.013  PMID:20153976
• Ballana, E., Senserrich, J., Pauls, E., Faner, R., Mercader, J. M., Uyttebroeck, F., Palou, E., Mena, M. P., Grau, E., Clotet, B., Ruiz, L., Telenti, A., et al. ZNRD1 (zinc ribbon domain-containing 1) is a host cellular factor that influences HIV-1 replication and disease progression Clinical Infectious Diseases  2010 50:1022-1032  DOI:10.1086/651114  PMID:20192730
• Rotger, M., Dang, K. K., Fellay, J., Heinzen, E. L., Feng, S., Descombes, P., Shianna, K. V., Ge, D., Gunthard, H. F., Goldstein, D. B., Telenti, A., Swiss HIV Cohort Study and Center for HIV/AIDS Vaccine Immunology Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals PLoS Pathogens  2010 6  DOI:10.1371/journal.ppat.1000781  PMID:20195503  PMCID:PMC2829051
• de Bakker, P. I. W., Telenti, A. Infectious diseases not immune to genome-wide association Nature Genetics  2010 42:731-732  DOI:10.1038/ng0910-731  PMID:20802473
• Fellay, J., Ge, D., Shianna, K. V., Colombo, S., Ledergerber, B., Cirulli, E. T., Urban, T. J., Zhang, K., Gumbs, C. E., Smith, J. P., Castagna, A., Cozzi-Lepri, A., et al. Common genetic variation and the control of HIV-1 in humans Plos Genetics  2009 5  DOI:10.1371/journal.pgen.1000791  PMID:20041166  PMCID:PMC2791220
• Rotger, M., Bayard, C., Taffe, P., Martinez, R., Cavassini, M., Bernasconi, E., Battegay, M., Hirschel, B., Furrer, H., Witteck, A., Weber, R., Ledergerber, B., et al. Contribution of genome-wide significant single-nucleotide polymorphisms and antiretroviral therapy to dyslipidemia in HIV-infected individuals: a longitudinal study Circulation-Cardiovascular Genetics  2009 2:621-628  DOI:10.1161/circgenetics.109.874412  PMID:20031643
• Ortiz, M., Guex, N., Patin, E., Martin, O., Xenarios, I., Ciuffi, A., Quintana-Murci, L., Telenti, A. Evolutionary trajectories of primate genes involved in HIV pathogenesis Molecular Biology and Evolution  2009 26:2865-2875  DOI:10.1093/molbev/msp197  PMID:19726537
• Thomas, R., Apps, R., Qi, Y., Gao, X., Male, V., O'HUigin, C., O'Connor, G., Ge, D., Fellay, J., Martin, J. N., Margolick, J., Goedert, J. J., et al. HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C Nature Genetics  2009 41:1290-1294  DOI:10.1038/ng.486  PMID:19935663  PMCID:PMC2887091
• Urban, T. J., Weintrob, A. C., Fellay, J., Colombo, S., Shianna, K. V., Gumbs, C., Rotger, M., Pelak, K., Dang, K. K., Detels, R., Martinson, J. J., O'Brien, S. J., et al. CCL3L1 and HIV/AIDS susceptibility Nature Medicine  2009 15:1110-1112  DOI:10.1038/nm1009-1110  PMID:19812560  PMCID:PMC2821825
• di Iulio, J., Fayet, A., Arab-Alameddine, M., Rotger, M., Lubomirov, R., Cavassini, M., Furrer, H., Gunthard, H. F., Colombo, S., Csajka, C., Eap, C. B., Decosterd, L. A., et al. In vivo analysis of efavirenz metabolism in individuals with impaired CYP2A6 function Pharmacogenetics and Genomics  2009 19:300-309  DOI:10.1097/FPC.0b013e328328d577  PMID:19238117
• Martin, O., Valsesia, A., Telenti, A., Xenarios, I., Stevenson, B. J. AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context Bioinformatics  2009 25:662-663  DOI:10.1093/bioinformatics/btp017  PMID:19168913  PMCID:PMC2647839
• Telenti, A. Safety concerns about CCR5 as an antiviral target Current Opinion in HIV and AIDS  2009 4:131-135  DOI:10.1097/COH.0b013e3283223d76  PMID:19339952
• Kazadi, K., Loeuillet, C., Deutsch, S., Ciuffi, A., Munoz, M., Beckmann, J. S., Moradpour, D., Antonarakis, S. E., Telenti, A. Genomic determinants of the efficiency of internal ribosomal entry sites of viral and cellular origin Nucleic Acids Research  2008 36:6918-6925  DOI:10.1093/nar/gkn812  PMID:18978018  PMCID:PMC2588522
• Fayet, A., Beguin, A., de Tejada, B. M., Colombo, S., Cavassini, M., Gerber, S., Eap, C. B., Telenti, A., Buclin, T., Biollaz, J., Decosterd, L. A. Determination of unbound antiretroviral drug concentrations by a modified ultrafiltration method reveals high variability in the free fraction Therapeutic Drug Monitoring  2008 30:511-522  PMID:18641538
• Rauch, A., Nolan, D., Furrer, H., McKinnon, E., John, M., Mallal, S., Gaudieri, S., Gunthard, H. F., Schmid, P., Battegay, M., Hirschel, B., Telenti, A., et al. HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy Clinical Infectious Diseases  2008 46:1921-1925  DOI:10.1086/588479  PMID:18466093
• Rotger, M., Telenti, A. Optimizing efavirenz treatment: CYP2B6 genotyping or therapeutic drug monitoring? European Journal of Clinical Pharmacology  2008 64:335-336  DOI:10.1007/s00228-007-0440-z  PMID:18188549
• Ge, D., Zhang, K., Need, A. C., Martin, O., Fellay, J., Urban, T. J., Telenti, A., Goldstein, D. B. WGAViewer: software for genomic annotation of whole genome association studies Genome Research  2008 18:640-643  DOI:10.1101/gr.071571.107  PMID:18256235  PMCID:PMC2279251
• Loeuillet, C., Deutsch, S., Ciuffi, A., Robyr, D., Taffe, P., Munoz, M., Beckmann, J. S., Antonarakis, S. E., Telenti, A. In vitro whole-genome analysis identifies a susceptibility locus for HIV-1 PLoS Biology  2008 6:319-327  DOI:10.1371/journal.pbio.0060032  PMID:18288889  PMCID:PMC2245987
• Colombo, S., Rauch, A., Rotger, M., Fellay, J., Martinez, R., Fux, C., Thurnheer, C., Gunthard, H. F., Goldstein, D. B., Furrer, H., Telenti, A. The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir Journal of Infectious Diseases  2008 198:864-867  DOI:10.1086/591184  PMID:18684101
• Telenti, A., Carrington, M. Host factors associated with outcome from primary human immunodeficiency virus-1 infection Current Opinion in HIV and AIDS  2008 3:28-35  DOI:10.1097/COH.0b013e3282f18ac0  PMID:19372941
• Loeuillet, C., Weale, M., Deutsch, S., Rotger, M., Soranzo, N., Wyniger, J., Lettre, G., Dupre, Y., Thuillard, D., Beckmann, J. S., Antonarakis, S. E., Goldstein, D. B., et al. Promoter polymorphisms and allelic imbalance in ABCB1 expression Pharmacogenetics and Genomics  2007 17:951-959  DOI:10.1097/FPC.0b013e3282eff934  PMID:18075465
• Rotger, M., Saumoy, M., Zhang, K. L., Flepp, M., Sahli, R., Decosterd, L., Telenti, A. Partial deletion of CYP2B6 owing to unequal crossover with CYP2B7 Pharmacogenetics and Genomics  2007 17:885-890  DOI:10.1097/FPC.0b013e3282ef5cd1  PMID:17885627
• Von Wyl, V., Yerly, S., Boni, J., Burgisser, P., Klimkait, T., Battegay, M., Furrer, H., Telenti, A., Hirschel, B., Vernazza, P. L., Bernasconi, E., Rickenbach, M., et al. Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types Archives of Internal Medicine  2007 167:1782-1790  DOI:10.1001/archinte.167.16.1782  PMID:17846398
• Arnedo, M., Taffe, P., Sahli, R., Furrer, H., Hirschel, B., Elzi, L., Weber, R., Vernazza, P., Bernasconi, E., Darioli, R., Bergmann, S., Beckmann, J. S., et al. Contribution of 20 single nucleotide polymorphisms of 13 genes to dyslipidemia associated with antiretroviral therapy Pharmacogenetics and Genomics  2007 17:755-764  DOI:10.1097/FPC.0b013e32814db8b7  PMID:17700364
• Fellay, J., Shianna, K. V., Ge, D., Colombo, S., Ledergerber, B., Weale, M., Zhang, K., Gumbs, C., Castagna, A., Cossarizza, A., Cozzi-Lepri, A., De Luca, A., et al. A whole-genome association study of major determinants for host control of HIV-1 Science  2007 317:944-947  DOI:10.1126/science.1143767  PMID:17641165  PMCID:PMC1991296
• Bochud, P. Y., Bochud, M., Telenti, A., Calandra, T. Innate immunogenetics: a tool for exploring new frontiers of host defence Lancet Infectious Diseases  2007 7:531-542  DOI:10.1016/s1473-3099(07)70185-8  PMID:17646026
• Este, J. A., Telenti, A. HIV entry inhibitors Lancet  2007 370:81-88  DOI:10.1016/s0140-6736(07)61052-6  PMID:17617275
• Lubomirov, R., Csajka, C., Telenti, A. ADME pathway approach for pharmacogenetic studies of anti-HIV therapy Pharmacogenomics  2007 8:623-633  DOI:10.2217/14622416.8.6.623  PMID:17559351
• Martin, M. P., Qi, Y., Gao, X., Yamada, E., Martin, J. N., Pereyra, F., Colombo, S., Brown, E. E., Shupert, W. L., Phair, J., Goedert, J. J., Buchbinder, S., et al. Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1 Nature Genetics  2007 39:733-740  DOI:10.1038/ng2035  PMID:17496894  PMCID:PMC4135476
• Zhang, K. L., Mangeat, B., Ortiz, M., Zoete, V., Trono, D., Telenti, A., Michielin, O. Model structure of human APOBEC3G PLoS One  2007 2  DOI:10.1371/journal.pone.0000378  PMID:17440614  PMCID:PMC1849894
• Bochud, P. Y., Hersberger, M., Taffe, P., Bochud, M., Stein, C. M., Rodrigues, S. D., Calandra, T., Francioli, P., Telenti, A., Speck, R. F., Aderem, A. Polymorphisms in Toll-like receptor 9 influence the clinical course of HIV-1 infection AIDS  2007 21:441-446  DOI:10.1097/QAD.0b013e328012b8ac  PMID:17301562
• Butticaz, C., Michielin, O., Wyniger, J., Telenti, A., Rothenberger, S. Silencing of both β-TrCP1 and HOS (β-TrCP2) is required to suppress human immunodeficiency virus type 1 Vpu-mediated CD4 down-modulation Journal of Virology  2007 81:1502-1505  DOI:10.1128/jvi.01711-06  PMID:17121803  PMCID:PMC1797504
• Keiser, O., Fellay, J., Opravil, M., Hirsch, H. H., Hirschel, B., Bernasconi, E., Vernazza, P. L., Rickenbach, M., Telenti, A., Furrer, H. Adverse events to antiretrovirals in the Swiss HIV Cohort Study: Effect on mortality and treatment modification Antiviral Therapy  2007 12:1157-1164  PMID:18240856
• Rotger, M., Colombo, S., Furrer, H., Decosterd, L., Buclin, T., Telenti, A. Does tenofovir influence efavirenz pharmacokinetics? Antiviral Therapy  2007 12:115-118  PMID:17503755
• Telenti, A., Egger, M. Identifying safety concerns from genetic data: lessons from the development of CCR5 inhibitors Antiviral Therapy  2007 12:147-148  PMID:17503656
• Gaudieri, S., Rauch, A., Park, L. P., Freitas, E., Herrmann, S., Jeffrey, G., Cheng, W., Pfafferott, K., Naidoo, K., Chapman, R., Battegay, M., Weber, R., et al. Evidence of viral adaptation to HLA class I-restricted immune pressure in chronic hepatitis C virus infection Journal of Virology  2006 80:11094-11104  DOI:10.1128/jvi.00912-06  PMID:17071929  PMCID:PMC1642167
• Telenti, A., Goldstein, D. B. Genomics meets HIV-1 Nature Reviews Microbiology  2006 4:865-873  DOI:10.1038/nrmicro1532  PMID:17041633  PMCID:PMC2043131
• Colombo, S., Buclin, T., Cavassini, M., Decosterd, L. A., Telenti, A., Biollaz, J., Csajka, C. Population pharmacokinetics of atazanavir in patients with human immunodeficiency virus infection Antimicrobial Agents and Chemotherapy  2006 50:3801-3808  DOI:10.1128/aac.00098-06  PMID:16940065  PMCID:PMC1635184
• Colombo, S., Buclin, T., Decosterd, L. A., Telenti, A., Furrer, H., Lee, B. L., Biollaz, J., Eap, C. B. Orosomucoid (α1-acid glycoprotein) plasma concentration and genetic variants: Effects on human immunodeficiency virus protease inhibitor clearance and cellular accumulation Clinical Pharmacology & Therapeutics  2006 80:307-318  DOI:10.1016/j.clpt.2006.06.006  PMID:17015049
• Goldschmidt, V., Bleiber, G., May, M., Martinez, R., Ortiz, M., Telenti, A. Role of common human TRIM5α variants in HIV-1 disease progression Retrovirology  2006 3  DOI:10.1186/1742-4690-3-54  PMID:16925802  PMCID:PMC1560158
• Ariumi, Y., Serhan, F., Turelli, P., Telenti, A., Trono, D. The integrase interactor I (INII) proteins facilitate Tat-mediated human immunodeficiency virus type I transcription Retrovirology  2006 3  DOI:10.1186/1742-4690-3-47  PMID:16889668  PMCID:PMC1557532
• Telenti, A. Host polymorphism in steps of the HIV-1 lifecycle after entry and other genetic variants influencing HIV-1 pathogenesis Current Opinion in HIV and AIDS  2006 1:232-240  DOI:10.1097/01.coh.0000221598.79906.12  PMID:19372815
• Ortiz, M., Bleiber, G., Martinez, R., Kaessmann, H., Telenti, A. Patterns of evolution of host proteins involved in retroviral pathogenesis Retrovirology  2006 3  DOI:10.1186/1742-4690-3-11  PMID:16460575  PMCID:PMC1409793
• Telenti, A., Bleiber, G. Host genetics of HIV-1 susceptibility Future Virology  2006 1:55-70  DOI:10.2217/17460794.1.1.55