recent publications
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academic article
- Zhu, C., Turner, A. M., Abplanalp, M. J., Kaiser, R. I., Webb, B., Siuzdak, G., Fortenberry, R. C. An Interstellar Synthesis of Glycerol Phosphates Astrophysical Journal Letters 2020 899 DOI:10.3847/2041-8213/aba744
- Xue, J. C., Domingo-Almenara, X., Guijas, C., Palermo, A., Rinschen, M. M., Isbell, J., Benton, H. P., Siuzdak, G. Enhanced in-Source Fragmentation Annotation Enables Novel Data Independent Acquisition and Autonomous METLIN Molecular Identification Analytical Chemistry 2020 92:6051-6059 DOI:10.1021/acs.analchem.0c00409 PMID:32242660
- Xue, J. C., Guijas, C., Benton, H. P., Warth, B., Siuzdak, G. METLIN MS2 molecular standards database: a broad chemical and biological resource Nature Methods 2020 17:953-954 DOI:10.1038/s41592-020-0942-5 PMID:32839599
- Guijas, C., Montenegro-Burke, J. R., Cintron-Colon, R., Domingo-Almenara, X., Sanchez-Alavez, M., Aguirre, C. A., Shankar, K., Majumder, E. L. W., Billings, E., Conti, B., Siuzdak, G. Metabolic adaptation to calorie restriction Science Signaling 2020 13 DOI:10.1126/scisignal.abb2490 PMID:32900879
- Domingo-Almenara, X., Guijas, C., Billings, E., Montenegro-Burke, J. R., Uritboonthai, W., Aisporna, A. E., Chen, E., Benton, H. P., Siuzdak, G. The METLIN small molecule dataset for machine learning-based retention time prediction Nature Communications 2019 10 DOI:10.1038/s41467-019-13680-7 PMID:31862874 PMCID:PMC6925099
- Cintron-Colon, R., Johnson, C. W., Montenegro-Burke, J. R., Guijas, C., Faulhaber, L., Sanchez-Alavez, M., Aguirre, C. A., Shankar, K., Singh, M., Galmozzi, A., Siuzdak, G., Saez, E., et al. Activation of kappa opioid receptor regulates the hypothermic response to calorie restriction and limits body weight loss Current Biology 2019 29:4291-4299 DOI:10.1016/j.cub.2019.10.027 PMID:31786059 PMCID:PMC6917995
- Rinschen, M. M., Palygin, O., Guijas, C., Palermo, A., Palacio-Escat, N., Domingo-Almenara, X., Montenegro-Burke, R., Saez-Rodriguez, J., Staruschenko, A., Siuzdak, G. Metabolic rewiring of the hypertensive kidney Science Signaling 2019 12 DOI:10.1126/scisignal.aax9760 PMID:31822592
- Galmozzi, A., Kok, B. P., Kim, A. S., Montenegro-Burke, J. R., Lee, J. Y., Spreafico, R., Mosure, S., Albert, V., Cintron-Colon, R., Godio, C., Webb, W. R., Conti, B., et al. PGRMC2 is an intracellular haem chaperone critical for adipocyte function Nature 2019 576:138-142 DOI:10.1038/s41586-019-1774-2 PMID:31748741 PMCID:PMC6895438
- Riva, A., Kuzyk, O., Forsberg, E., Siuzdak, G., Pfann, C., Herbold, C., Daims, H., Loy, A., Warth, B., Berry, D. A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome Nature Communications 2019 10 DOI:10.1038/s41467-019-12413-0 PMID:31554820 PMCID:PMC6761162
- Rinschen, M. M., Ivanisevic, J., Giera, M., Siuzdak, G. Identification of bioactive metabolites using activity metabolomics Nature Reviews Molecular Cell Biology 2019 20:353-367 DOI:10.1038/s41580-019-0108-4 PMID:30814649
- Montenegro-Burke, J. R., Woldstad, C. J., Fang, M., Bade, A. N., McMillan, J., Edagwa, B., Boska, M. D., Gendelman, H. E., Siuzdak, G. Nanoformulated antiretroviral therapy attenuates brain metabolic oxidative stress Molecular Neurobiology 2019 56:2896-2907 DOI:10.1007/s12035-018-1273-8 PMID:30069830 PMCID:PMC6403019
- Domingo-Almenara, X., Montenegro-Burke, J. R., Guijas, C., Majumder, E. L. W., Benton, H. P., Siuzdak, G. Autonomous METLIN-guided in-source fragment annotation for untargeted metabolomics Analytical Chemistry 2019 91:3246-3253 DOI:10.1021/acs.analchem.8b03126 PMID:30681830
- Krantz, G. P., Lucas, K., Wunderlich, E. L., Hoang, L. T., Avci, R., Siuzdak, G., Fields, M. W. Bulk phase resource ratio alters carbon steel corrosion rates and endogenously produced extracellular electron transfer mediators in a sulfate-reducing biofilm Biofouling 2019 1-15 DOI:10.1080/08927014.2019.1646731 PMID:31402749
- Warth, B., Palermo, A., Rattray, N. J. W., Lee, N. V., Zhu, Z., Hoang, L. T., Cai, Y., Mazurek, A., Dann, S., VanArsdale, T., Fantin, V. R., Shields, D., et al. Palbociclib and fulvestrant act in synergy to modulate central carbon metabolism in breast cancer cells Metabolites 2019 9 DOI:10.3390/metabo9010007 PMID:30609717 PMCID:PMC6359333
- Guijas, C., Siuzdak, G. Reply to comment on METLIN: A technology platform for identifying knowns and unknowns Analytical Chemistry 2018 90:13128-13129 DOI:10.1021/acs.analchem.8b04081 PMID:30299932
- Kok, B. P., Galmozzi, A., Littlejohn, N. K., Albert, V., Godio, C., Kim, W., Kim, S. M., Bland, J. S., Grayson, N., Fang, M. L., Meyerhof, W., Siuzdak, G., et al. Intestinal bitter taste receptor activation alters hormone secretion and imparts metabolic benefits Molecular Metabolism 2018 16:76-87 DOI:10.1016/j.molmet.2018.07.013 PMID:30120064 PMCID:PMC6158035
- Domingo-Almenara, X., Montenegro-Burke, J. R., Ivanisevic, J., Thomas, A., Sidibe, J., Teav, T., Guijas, C., Aisporna, A. E., Rinehart, D., Hoang, L., Nordstrom, A., Gomez-Romero, M., et al. CMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules Nature Methods 2018 15:681-684 DOI:10.1038/s41592-018-0110-3 PMID:30150755
- Huan, T., Palermo, A., Ivanisevic, J., Rinehart, D., Edler, D., Phommavongsay, T., Benton, H. P., Guijas, C., Domingo-Almenara, X., Warth, B., Siuzdak, G. Autonomous multimodal metabolomics data integration for comprehensive pathway analysis and systems biology Analytical Chemistry 2018 90:8396-8403 DOI:10.1021/acs.analchem.8b00875 PMID:29893550
- Palermo, A., Forsberg, E. M., Warth, B., Aisporna, A. E., Billings, E., Kuang, E., Benton, H. P., Berry, D., Siuzdak, G. Fluorinated gold nanoparticles for nanostructure imaging mass spectrometry ACS Nano 2018 12:6938-6948 DOI:10.1021/acsnano.8b02376 PMID:29966083
- Robinson, A. R., Yousefzadeh, M. J., Rozgaja, T. A., Wang, J., Li, X., Tilstra, J. S., Feldman, C. H., Gregg, S. Q., Johnsong, C. H., Skoda, E. M., Frantz, M. C., Bell-Temin, H., et al. Spontaneous DNA damage to the nuclear genome promotes senescence, redox imbalance and aging Redox Biology 2018 17:259-273 DOI:10.1016/j.redox.2018.04.007 PMID:29747066 PMCID:PMC6006678
- Forsberg, E. M., Huan, T., Rinehart, D., Benton, H. P., Warth, B., Hilmers, B., Siuzdak, G. Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online Nature Protocols 2018 13:633-651 DOI:10.1038/nprot.2017.151 PMID:29494574
- Guijas, C., Montenegro-Burke, J. R., Warth, B., Spilker, M. E., Siuzdak, G. Metabolomics activity screening for identifying metabolites that modulate phenotype Nature Biotechnology 2018 36:316-320 DOI:10.1038/nbt.4101 PMID:29621222
- Warth, B., Raffeiner, P., Granados, A., Huan, T., Fang, M., Forsberg, E. M., Benton, H. P., Goetz, L., Johnson, C. H., Siuzdak, G. Metabolomics reveals that dietary xenoestrogens alter cellular metabolism induced by palbociclib/letrozole combination cancer therapy Cell Chemical Biology 2018 25:291-300.e3 DOI:10.1016/j.chembiol.2017.12.010 PMID:29337187 PMCID:PMC5856613
- Guijas, C., Montenegro-Burke, J. R., Domingo-Almenara, X., Palermo, A., Warth, B., Hermann, G., Koellensperger, G., Huan, T., Uritboonthai, W., Aisporna, A. E., Wolan, D. W., Spilker, M. E., et al. METLIN: A technology platform for identifying knowns and unknowns Analytical Chemistry 2018 90:3156-3164 DOI:10.1021/acs.analchem.7b04424 PMID:29381867
- Giera, M., dos Santos, F. B., Siuzdak, G. Metabolite-induced protein expression guided by metabolomics and systems biology Cell Metabolism 2018 27:270-272 DOI:10.1016/j.cmet.2018.01.002 PMID:29414681
- Domingo-Almenara, X., Montenegro-Burke, J. R., Benton, H. P., Siuzdak, G. Annotation: A computational solution for streamlining metabolomics analysis Analytical Chemistry 2018 90:480-489 DOI:10.1021/acs.analchem.7b03929 PMID:29039932 PMCID:PMC5750104
- Giera, M., Spilker, M. E., Siuzdak, G. Metabolomics: the omics' superglue The Analytical Scientist 2018 218
- Beyer, B. A., Fang, M., Sadrian, B., Montenegro-Burke, J. R., Plaisted, W. C., Kok, B. P. C., Saez, E., Kondo, T., Siuzdak, G., Lairson, L. L. Metabolomics-based discovery of a metabolite that enhances oligodendrocyte maturation Nature Chemical Biology 2018 14:22-28 DOI:10.1038/nchembio.2517 PMID:29131145
- Warth, B., Spangler, S., Fang, M., Johnson, C. H., Forsberg, E. M., Granados, A., Martin, R. L., Domingo-Almenara, X., Huan, T., Rinehart, D., Montenegro-Burke, J. R., Hilmers, B., et al. Exposome-scale investigations guided by global metabolomics, pathway analysis, and cognitive computing Analytical Chemistry 2017 89:11505-11513 DOI:10.1021/acs.analchem.7b02759 PMID:28945073
- Johnson, C. H., Santidrian, A. F., LeBoeuf, S. E., Kurczy, M. E., Rattray, N. J. W., Rattray, Z., Warth, B., Ritland, M., Hoang, L. T., Loriot, C., Higa, J., Hansen, J. E., et al. Metabolomics guided pathway analysis reveals link between cancer metastasis, cholesterol sulfate, and phospholipids Cancer & Metabolism 2017 5 DOI:10.1186/s40170-017-0171-2 PMID:29093815 PMCID:PMC5663111
- Gao, J., Louie, K. B., Steinke, P., Bowen, B. P., de Raad, M., Zuckermann, R. N., Siuzdak, G., Northen, T. R. Morphology-driven control of metabolite selectivity using nanostructure-initiator mass spectrometry Analytical Chemistry 2017 89:6521-6526 DOI:10.1021/acs.analchem.7b00599 PMID:28520405
- Warth, B., Levin, N., Rinehart, D., Teijaro, J., Benton, H. P., Siuzdak, G. Metabolizing data in the cloud Trends in Biotechnology 2017 35:481-483 DOI:10.1016/j.tibtech.2016.12.010 PMID:28117091
- Liu, J., Suel, G., Stevens, T. J., Lando, D., Basu, S., Atkinson, L. P., Laue, E. D., Corson, F., Schweisguth, F., Goni-Moreno, A., de Lorenzo, V., Koonin, E., et al. Principles of Systems Biology, No. 17 Cell Systems 2017 4:472-475 PMID:28544876
- Huan, T., Forsberg, E. M., Rinehart, D., Johnson, C. H., Ivanisevic, J., Benton, H. P., Fang, M., Aisporna, A., Hilmers, B., Poole, F. L., Thorgersen, M. P., Adams, M. W. W., et al. Systems biology guided by XCMS Online metabolomics Nature Methods 2017 14:461-462 PMID:28448069
- Gendelman, H. E., Zhang, Y., Santamaria, P., Olson, K. E., Schutt, C. R., Bhatti, D., Shetty, B. L. D., Lu, Y., Estes, K. A., Standaert, D. G., Heinrichs-Graham, E., Larson, L., et al. Evaluation of the safety and immunomodulatory effects of sargramostim in a randomized, double-blind phase 1 clinical Parkinson's disease trial NPJ Parkinson's Disease 2017 3 DOI:10.1038/s41531-017-0013-5 PMID:28649610 PMCID:PMC5445595
- Montenegro-Burke, J. R., Aisporna, A. E., Benton, H. P., Rinehart, D., Fang, M., Huan, T., Warth, B., Forsberg, E., Abe, B. T., Iyanisevic, J., Wolan, D. W., Teyton, L., et al. Data streaming for metabolomics: accelerating data processing and analysis from days to minutes Analytical Chemistry 2017 89:1254-1259 DOI:10.1021/acs.analchem.6b03890 PMID:27983788 PMCID:PMC5244434
- Warth, B., Spangler, S., Fang, M., Johnson, C., Forsberg, E., Granados, A., Martin, R. L., Domingo, X., Huan, T., Rinehart, D., Montenegro-Burke, J. R., Hilmers, B., et al. Exposing the exposome with global metabolomics and cognitive computing bioRxiv 2017 DOI:10.1101/145722
- Forsberg, E., Fang, M. L., Siuzdak, G. Staying alive: measuring intact viable microbes with electrospray ionization mass spectrometry Journal of the American Society for Mass Spectrometry 2017 28:14-20 DOI:10.1007/s13361-016-1440-y PMID:27456857 PMCID:PMC5177535
- Johnson, C. H., Spilker, M. E., Goetz, L., Peterson, S. N., Siuzdak, G. Metabolite and microbiome interplay in cancer immunotherapy Cancer Research 2016 76:6146-6152 DOI:10.1158/0008-5472.can-16-0309 PMID:27729325 PMCID:PMC5093024
- Wang, J. H., Westenskow, P. D., Fang, M., Friedlander, M., Siuzdak, G. Quantitative metabolomics of photoreceptor degeneration and the effects of stem cell-derived retinal pigment epithelium transplantation Philosophical Transactions of the Royal Society a-Mathematical Physical and Engineering Sciences 2016 374 DOI:10.1098/rsta.2015.0376 PMID:27644974 PMCID:PMC5031641
- Montenegro-Burke, J. R., Phommavongsay, T., Aisporna, A. E., Huan, T., Rinehart, D., Forsberg, E., Poole, F. L., Thorgersen, M. P., Adams, M. W., Krantz, G., Fields, M. W., Northen, T. R., et al. Smartphone analytics: mobilizing the lab into the cloud for omicscale analyses Analytical Chemistry 2016 88:9753-9758 DOI:10.1021/acs.analchem.6b02676 PMID:27560777 PMCID:PMC5054939
- Johnson, C. H., Ivanisevic, J., Siuzdak, G. Metabolomics: beyond biomarkers and towards mechanisms Nature Reviews Molecular Cell Biology 2016 17:451-459 DOI:10.1038/nrm.2016.25 PMID:26979502
- Kurczy, M. E., Forsberg, E. M., Thorgersen, M. P., Poole II, F. L., Benton, H. P., Ivanisevic, J., Tran, M. L., Wall, J. D., Elias, D. A., Adams, M. W. W., Siuzdak, G. Global isotope metabolomics reveals adaptive strategies for nitrogen assimilation ACS Chemical Biology 2016 11:1677-1685 DOI:10.1021/acschembio.6b00082 PMID:27045776
- Ivanisevic, J., Stauch, K. L., Petrascheck, M., Benton, H. P., Epstein, A. A., Fang, M., Gorantla, S., Tran, M., Hoang, L., Kurczy, M. E., Boska, M. D., Gendelman, H. E., et al. Metabolic drift in the aging brain Aging 2016 8:1000-1020 DOI:10.18632/aging.100961 PMID:27182841 PMCID:PMC4931850
- Kurihara, T., Westenskow, P. D., Gantner, M. L., Usui, Y., Schultz, A., Bravo, S., Aguilar, E., Wittgrove, C., Friedlander, M. S. H., Paris, L. P., Chew, E., Siuzdak, G., et al. Hypoxia-induced metabolic stress in retinal pigment epithelial cells is sufficient to induce photoreceptor degeneration Elife 2016 5 DOI:10.7554/eLife.14319 PMID:26978795 PMCID:PMC4848091
- Paris, L. P., Johnson, C. H., Aguilar, E., Usui, Y., Cho, K., Hoang, L. T., Feitelberg, D., Benton, H. P., Westenskow, P. D., Kurihara, T., Trombley, J., Tsubota, K., et al. Global metabolomics reveals metabolic dysregulation in ischemic retinopathy Metabolomics 2016 12:15 DOI:10.1007/s11306-015-0877-5 PMID:26617478 PMCID:PMC4651979
- Kurczy, M. E., Ivanisevic, J., Johnson, C. H., Uritboonthai, W., Hoang, L., Fang, M., Hicks, M., Aldebot, A., Rinehart, D., Mellander, L. J., Tautenhahn, R., Patti, G. J., et al. Determining conserved metabolic biomarkers from a million database queries Bioinformatics 2015 31:3721-3724 DOI:10.1093/bioinformatics/btv475 PMID:26275895 PMCID:PMC4836397
- Fang, M., Ivanisevic, J., Benton, H. P., Johnson, C. H., Patti, G. J., Hoang, L. T., Uritboonthai, W., Kurczy, M. E., Siuzdak, G. Thermal degradation of small molecules: a global metabolomic investigation Analytical Chemistry 2015 87:10935-10941 DOI:10.1021/acs.analchem.5b03003 PMID:26434689 PMCID:PMC4633772
- Deguchi, H., Banerjee, Y., Trauger, S., Siuzdak, G., Kalisiak, E., Fernandez, J. A., Hoang, L., Tran, M., Yegneswaran, S., Elias, D. J., Griffin, J. H. Acylcarnitines are anticoagulants that inhibit factor Xa and are reduced in venous thrombosis, based on metabolomics data Blood 2015 126:1595-1600 DOI:10.1182/blood-2015-03-636761 PMID:26175037 PMCID:PMC4582336
- Johnson, C., Patti, G., Courade, J. P., Shriver, L., Hoang, L., Manchester, M., Siuzdak, G. Alterations in spinal cord metabolism during treatment of neuropathic pain Journal of Neuroimmune Pharmacology 2015 10:396-401 DOI:10.1007/s11481-015-9624-y PMID:26232265 PMCID:PMC4548716
- Ivanisevic, J., Siuzdak, G. The role of metabolomics in brain metabolism research Journal of Neuroimmune Pharmacology 2015 10:391-395 DOI:10.1007/s11481-015-9621-1 PMID:26201839 PMCID:PMC4546538
- Ivanisevic, J., Elias, D., Deguchi, H., Averell, P. M., Kurczy, M., Johnson, C. H., Tautenhahn, R., Zhu, Z., Watrous, J., Jain, M., Griffin, J., Patti, G. J., et al. Arteriovenous blood metabolomics: a readout of intra-tissue metabostasis Scientific Reports 2015 5:12757 DOI:10.1038/srep12757 PMID:26244428 PMCID:PMC4525490
- Ivanisevic, J., Benton, H. P., Rinehart, D., Epstein, A., Kurczy, M. E., Boska, M. D., Gendelman, H. E., Siuzdak, G. An interactive cluster heat map to visualize and explore multidimensional metabolomic data Metabolomics 2015 11:1029-1034 DOI:10.1007/s11306-014-0759-2 PMID:26195918 PMCID:PMC4505375
- Nikolskiy, I., Siuzdak, G., Patti, G. J. Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry Bioinformatics 2015 31:2017-2023 DOI:10.1093/bioinformatics/btv085 PMID:25691443 PMCID:PMC4481697
- Johnson, C. H., Dejea, C. M., Edler, D., Hoang, L. T., Santidrian, A. F., Felding, B. H., Ivanisevic, J., Cho, K., Wick, E. C., Hechenbleikner, E. M., Uritboonthai, W., Goetz, L., et al. Metabolism links bacterial biofilms and colon carcinogenesis Cell Metabolism 2015 21:891-897 DOI:10.1016/j.cmet.2015.04.011 PMID:25959674 PMCID:PMC4456201
- Benton, H. P., Ivanisevic, J., Mahieu, N. G., Kurczy, M. E., Johnson, C. H., Franco, L., Rinehart, D., Valentine, E., Gowda, H., Ubhi, B. K., Tautenhahn, R., Gieschen, A., et al. Autonomous metabolomics for rapid metabolite identification in global profiling Analytical Chemistry 2015 87:884-891 DOI:10.1021/ac5025649 PMID:25496351 PMCID:PMC4303330
- Johnson, C. H., Ivanisevic, J., Benton, H. P., Siuzdak, G. Bioinformatics: the next frontier of metabolomics Analytical Chemistry 2015 87:147-156 DOI:10.1021/ac5040693 PMID:25389922 PMCID:PMC4287838
- Kurczy, M. E., Zhu, Z. J., Ivanisevic, J., Schuyler, A. M., Lalwani, K., Santidrian, A. F., David, J. M., Giddabasappa, A., Roberts, A. J., Olivos, H. J., O'Brien, P. J., Franco, L., et al. Comprehensive bioimaging with fluorinated nanoparticles using breathable liquids Nature Communications 2015 6:5998 DOI:10.1038/ncomms6998 PMID:25601659 PMCID:PMC4454288
- Ivanisevic, J., Epstein, A. A., Kurczy, M. E., Benton, P. H., Uritboonthai, W., Fox, H. S., Boska, M. D., Gendelman, H. E., Siuzdak, G. Brain region mapping using global metabolomics Chemistry & Biology 2014 21:1575-1584 DOI:10.1016/j.chembiol.2014.09.016 PMID:25457182 PMCID:PMC4304924
- Patti, G. J., Tautenhahn, R., Johannsen, D., Kalisiak, E., Ravussin, E., Bruning, J. C., Dillin, A., Siuzdak, G. Meta-analysis of global metabolomic data identifies metabolites associated with life-span extension Metabolomics 2014 10:737-743 DOI:10.1007/s11306-013-0608-8 PMID:25530742 PMCID:PMC4267291
- Gowda, H., Ivanisevic, J., Johnson, C. H., Kurczy, M. E., Benton, H. P., Rinehart, D., Nguyen, T., Ray, J., Kuehl, J., Arevalo, B., Westenskow, P. D., Wang, J. H., et al. Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses Analytical Chemistry 2014 86:6931-6939 DOI:10.1021/ac500734c PMID:24934772 PMCID:PMC4215863
- Johnson, C. H., Fisher, T. S., Hoang, L. T., Felding, B. H., Siuzdak, G., O'Brien, P. J. Luciferase does not alter metabolism in cancer cells Metabolomics 2014 10:354-360 DOI:10.1007/s11306-014-0622-5 PMID:24791164 PMCID:PMC4002053
- Rinehart, D., Johnson, C. H., Nguyen, T., Ivanisevic, J., Benton, H. P., Lloyd, J., Arkin, A. P., Deutschbauer, A. M., Patti, G. J., Siuzdak, G. Metabolomic data streaming for biology-dependent data acquisition Nature Biotechnology 2014 32:524-527 DOI:10.1038/nbt.2927 PMID:24911492 PMCID:PMC4112958
- Deguchi, H., Elias, D. J., Trauger, S., Zhang, H. M., Kalisiak, E., Siuzdak, G., Griffin, J. H. Warfarin untargeted metabolomics study identifies novel procoagulant ethanolamide plasma lipids British Journal of Haematology 2014 165:409-412 DOI:10.1111/bjh.12720 PMID:24450944 PMCID:PMC3984601
- Ivanisevic, J., Zhu, Z. J., Plate, L., Tautenhahn, R., O'Brien, P. J., Johnson, C. H., Marletta, M. A., Patti, G. J., Siuzdak, G. Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism Analytical Chemistry 2013 85:6876-6884 DOI:10.1021/ac401140h PMID:23781873 PMCID:PMC3761963
- Blankman, J. L., Long, J. Z., Trauger, S. A., Siuzdak, G., Cravatt, B. F. ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC Proceedings of the National Academy of Sciences of the United States of America 2013 110:1500-1505 DOI:10.1073/pnas.1217121110 PMID:23297193 PMCID:PMC3557017
- Patti, G. J., Tautenhahn, R., Rinehart, D., Cho, K., Shriver, L. P., Manchester, M., Nikolskiy, I., Johnson, C. H., Mahieu, N. G., Siuzdak, G. A view from above: Cloud plots to visualize global metabolomic data Analytical Chemistry 2013 85:798-804 DOI:10.1021/ac3029745 PMID:23206250 PMCID:PMC3716252
- Tautenhahn, R., Cho, K., Uritboonthai, W., Zhu, Z., Patti, G. J., Siuzdak, G. An accelerated workflow for untargeted metabolomics using the METLIN database Nature Biotechnology 2012 30:826-828 DOI:10.1038/nbt.2348 PMID:22965049 PMCID:PMC3666346
- Tautenhahn, R., Patti, G. J., Rinehart, D., Siuzdak, G. XCMS Online: a web-based platform to process untargeted metabolomic data Analytical Chemistry 2012 84:5035-5039 DOI:10.1021/ac300698c PMID:22533540 PMCID:PMC3703953
- Greving, M., Cheng, X. L., Reindl, W., Bowen, B., Deng, K., Louie, K., Nyman, M., Cohen, J., Singh, A., Simmons, B., Adams, P., Siuzdak, G., et al. Acoustic deposition with nims as a high-throughput enzyme activity assay Analytical and Bioanalytical Chemistry 2012 403:707-711 DOI:10.1007/s00216-012-5908-8 PMID:22407334
- Patti, G. J., Yanes, O., Siuzdak, G. Metabolomics: The apogee of the omics trilogy Nature Reviews Molecular Cell Biology 2012 13:263-269 DOI:10.1038/nrm3314 PMID:22436749 PMCID:PMC3682684
- Patti, G. J., Tautenhahn, R., Siuzdak, G. Meta-analysis of untargeted metabolomic data from multiple profiling experiments Nature Protocols 2012 7:508-516 DOI:10.1038/nprot.2011.454 PMID:22343432 PMCID:PMC3683249
- Patti, G. J., Yanes, O., Shriver, L. P., Courade, J. P., Tautenhahn, R., Manchester, M., Siuzdak, G. Metabolomics implicates altered sphingolipids in chronic pain of neuropathic origin Nature Chemical Biology 2012 8:232-234 DOI:10.1038/nchembio.767 PMID:22267119 PMCID:PMC3567618
- Krohne, T. U., Westenskow, P. D., Kurihara, T., Friedlander, D. F., Lehmann, M., Dorsey, A. L., Li, W. L., Zhu, S. Y., Schultz, A., Wang, J. H., Siuzdak, G., Ding, S., et al. Generation of retinal pigment epithelial cells from small molecules and OCT4 reprogrammed human induced pluripotent stem cells Stem Cells Translational Medicine 2012 1:96-109 DOI:10.5966/sctm.2011-0057 PMID:22532929 PMCID:PMC3328503
- Panopoulos, A. D., Yanes, O., Ruiz, S., Kida, Y. S., Diep, D., Tautenhahn, R., Herrerias, A., Batchelder, E. M., Plongthongkum, N., Lutz, M., Berggren, W. T., Zhang, K., et al. The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming Cell Research 2012 22:168-177 DOI:10.1038/cr.2011.177 PMID:22064701 PMCID:PMC3252494
- Long, J. Z., Cisar, J. S., Milliken, D., Niessen, S., Wang, C., Trauger, S. A., Siuzdak, G., Cravatt, B. F. Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids Nature Chemical Biology 2011 7:763-765 DOI:10.1038/nchembio.659 PMID:21926997 PMCID:PMC3201731
- Marchetti, V., Yanes, O., Aguilar, E., Wang, M., Friedlander, D., Moreno, S., Storm, K., Zhan, M., Naccache, S., Nemerow, G., Siuzdak, G., Friedlander, M. Differential macrophage polarization promotes tissue remodeling and repair in a model of ischemic retinopathy Scientific Reports 2011 1:76 DOI:10.1038/srep00076 PMID:22355595 PMCID:PMC3216563
- Yanes, O., Tautenhahn, R., Patti, G. J., Siuzdak, G. Expanding coverage of the metabolome for global metabolite profiling Analytical Chemistry 2011 83:2152-2161 DOI:10.1021/ac102981k PMID:21329365 PMCID:PMC3285547
- Lancaster, W. A., Praissman, J. L., Poole, F. L., Cvetkovic, A., Menon, A. L., Scott, J. W., Jenney, F. E., Thorgersen, M. P., Kalisiak, E., Apon, J. V., Trauger, S. A., Siuzdak, G., et al. A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data BMC Bioinformatics 2011 12:64 DOI:10.1186/1471-2105-12-64 PMID:21356119 PMCID:PMC3058030
- Pendyala, G., Trauger, S. A., Siuzdak, G., Fox, H. S. Short communication: Quantitative proteomic plasma profiling reveals activation of host defense to oxidative stress in chronic SIV and methamphetamine comorbidity AIDS Research and Human Retroviruses 2011 27:179-182 DOI:10.1089/aid.2010.0090 PMID:20929344 PMCID:PMC3045074
- Tautenhahn, R., Patti, G. J., Kalisiak, E., Miyamoto, T., Schmidt, M., Lo, F. Y., McBee, J., Baliga, N. S., Siuzdak, G. metaXCMS: second-order analysis of untargeted metabolomics data Analytical Chemistry 2011 83:696-700 DOI:10.1021/ac102980g PMID:21174458 PMCID:PMC3654666
- Patti, G. J., Tautenhahn, R., Fonslow, B. R., Cho, Y., Deutschbauer, A., Arkin, A., Northen, T., Siuzdak, G. Meta-analysis of global metabolomics and proteomics data to link alterations with phenotype Spectroscopy-an International Journal 2011 26:151-154 DOI:10.3233/spe-2011-0534
- Greving, M. P., Patti, G. J., Siuzdak, G. Nanostructure-initiator mass spectrometry metabolite analysis and imaging Analytical Chemistry 2011 83:2-7 DOI:10.1021/ac101565f PMID:21049956 PMCID:PMC3012143
- Powers, M. E., Smith, P. A., Roberts, T. C., Fowler, B. J., King, C. C., Trauger, S. A., Siuzdak, G., Romesberg, F. E. Type I signal peptidase and protein secretion in Staphylococcus epidermidis Journal of Bacteriology 2011 193:340-348 DOI:10.1128/jb.01052-10 PMID:21075926 PMCID:PMC3019839
- Patti, G. J., Shriver, L. P., Wassif, C. A., Woo, H. K., Uritboonthai, W., Apon, J., Manchester, M., Porter, F. D., Siuzdak, G. Nanostructure-initiator mass spectrometry (NIMS) imaging of brain cholesterol metabolites in Smith-Lemli-Opitz syndrome Neuroscience 2010 170:858-864 DOI:10.1016/j.neuroscience.2010.07.038 PMID:20670678 PMCID:PMC2952448
- Kopp, F., Komatsu, T., Nomura, D. K., Trauger, S. A., Thomas, J. R., Siuzdak, G., Simon, G. M., Cravatt, B. F. The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice Chemistry & Biology 2010 17:831-840 DOI:10.1016/j.chembiol.2010.06.009 PMID:20797612 PMCID:PMC2931592
- Cvetkovic, A., Menon, A. L., Thorgersen, M. P., Scott, J. W., Poole, F. L., Jenney, F. E., Lancaster, W. A., Praissman, J. L., Shanmukh, S., Vaccaro, B. J., Trauger, S. A., Kalisiak, E., et al. Microbial metalloproteomes are largely uncharacterized Nature 2010 466:779-782 DOI:10.1038/nature09265 PMID:20639861
- Yanes, O., Clark, J., Wong, D. M., Patti, G. J., Sanchez-Ruiz, A., Benton, H. P., Trauger, S. A., Desponts, C., Ding, S., Siuzdak, G. Metabolic oxidation regulates embryonic stem cell differentiation Nature Chemical Biology 2010 6:411-417 DOI:10.1038/nchembio.364 PMID:20436487 PMCID:PMC2873061
- Lowe, R. D., Szili, E. J., Kirkbride, P., Thissen, H., Siuzdak, G., Voelcker, N. H. Combined immunocapture and laser desorption/ionization mass spectrometry on porous silicon Analytical Chemistry 2010 82:4201-4208 DOI:10.1021/ac100455x PMID:20411919
- Facciotti, M. T., Pang, W. L., Lo, F. Y., Whitehead, K., Koide, T., Masumura, K., Pan, M., Kaur, A., Larsen, D. J., Reiss, D. J., Hoang, L., Kalisiak, E., et al. Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis BMC Systems Biology 2010 4:64 DOI:10.1186/1752-0509-4-64 PMID:20470417 PMCID:PMC2880973
- Patti, G. J., Woo, H. K., Yanes, O., Shriver, L., Thomas, D., Uritboonthai, W., Apon, J. V., Steenwyk, R., Manchester, M., Siuzdak, G. Detection of carbohydrates and steroids by cation-enhanced nanostructure-initiator mass spectrometry (NIMS) for biofluid analysis and tissue imaging Analytical Chemistry 2010 82:121-128 DOI:10.1021/ac9014353 PMID:19961200 PMCID:PMC2802282
- Dorrell, M. I., Aguilar, E., Jacobson, R., Trauger, S. A., Friedlander, J., Siuzdak, G., Friedlander, M. Maintaining retinal astrocytes normalizes revascularization and prevents vascular pathology associated with oxygen-induced retinopathy Glia 2010 58:43-54 DOI:10.1002/glia.20900 PMID:19544395 PMCID:PMC2814838
- Pendyala, G., Trauger, S. A., Siuzdak, G., Fox, H. S. Quantitative plasma proteomic profiling identifies the vitamin E binding protein afamin as a potential pathogenic factor in SIV induced CNS disease Journal of Proteome Research 2010 9:352-358 DOI:10.1021/pr900685u PMID:19908921 PMCID:PMC2801767
- Crews, B., Wikoff, W. R., Patti, G. J., Woo, H. K., Kalisiak, E., Heideker, J., Siuzdak, G. Variability analysis of human plasma and cerebral spinal fluid reveals statistical significance of changes in mass spectrometry-based metabolomics data Analytical Chemistry 2009 81:8538-8544 DOI:10.1021/ac9014947 PMID:19764780 PMCID:PMC3058611
- Wikoff, W. R., Kalisak, E., Trauger, S., Manchester, M., Siuzdak, G. Response and recovery in the plasma metabolome tracks the acute LCMV-induced immune response Journal of Proteome Research 2009 8:3578-3587 DOI:10.1021/pr900275p PMID:19496611 PMCID:PMC3437991
- Woo, H. K., Go, E. P., Hoang, L., Trauger, S. A., Bowen, B., Siuzdak, G., Northen, T. R. Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry Rapid Communications in Mass Spectrometry 2009 23:1849-1855 DOI:10.1002/rcm.4076 PMID:19449318 PMCID:PMC3052201
- Pendyala, G., Trauger, S. A., Kalisiak, E., Ellis, R. J., Siuzdak, G., Fox, H. S. Cerebrospinal fluid proteomics reveals potential pathogenic changes in the brains of SIV-infected monkeys Journal of Proteome Research 2009 8:2253-2260 DOI:10.1021/pr800854t PMID:19281240 PMCID:PMC2682714
- Koudelka, K. J., Destito, G., Plummer, E. M., Trauger, S. A., Siuzdak, G., Manchester, M. Endothelial targeting of cowpea mosaic virus (CPMV) via surface vimentin PLoS Pathogens 2009 5:e1000417 DOI:10.1371/journal.ppat.1000417 PMID:19412526 PMCID:PMC2670497
- Yanes, O., Woo, H. K., Northen, T. R., Oppenheimer, S. R., Shriver, L., Apon, J., Estrada, M. N., Potchoiba, M. J., Steenwyk, R., Manchester, M., Siuzdak, G. Nanostructure initiator mass spectrometry: Tissue imaging and direct biofluid analysis Analytical Chemistry 2009 81:2969-2975 DOI:10.1021/ac802576q PMID:19301920 PMCID:PMC2676195
- Menon, A. L., Poole, F. L., Cvetkovic, A., Trauger, S. A., Kalisiak, E., Scott, J. W., Shanmukh, S., Praissman, J., Jenney, F. E., Wikoff, W. R., Apon, J. V., Siuzdak, G., et al. Novel multiprotein complexes identified in the hyperthermophilic archaeon pyrococcus furiosus by non-denaturing fractionation of the native proteome Molecular & Cellular Proteomics 2009 8:735-751 DOI:10.1074/mcp.M800246-MCP200 PMID:19043064 PMCID:PMC2668238
- Wikoff, W. R., Anfora, A. T., Liu, J., Schultz, P. G., Lesley, S. A., Peters, E. C., Siuzdak, G. Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites Proceedings of the National Academy of Sciences of the United States of America 2009 106:3698-3703 DOI:10.1073/pnas.0812874106 PMID:19234110 PMCID:PMC2656143
- Dorrell, M. I., Aguilar, E., Jacobson, R., Yanes, O., Gariano, R., Heckenlively, J., Banin, E., Ramirez, G. A., Gasmi, M., Bird, A., Siuzdak, G., Friedlander, M. Antioxidant or neurotrophic factor treatment preserves function in a mouse model of neovascularization-associated oxidative stress Journal of Clinical Investigation 2009 119:611-623 DOI:10.1172/jci35977 PMID:19188685 PMCID:PMC2648679
- Kalisiak, J., Trauger, S. A., Kalisiak, E., Morita, H., Fokin, V. V., Adams, M. W. W., Sharpless, K. B., Siuzdak, G. Identification of a new endogenous metabolite and the characterization of its protein interactions through an immobilization approach Journal of the American Chemical Society 2009 131:378-386 DOI:10.1021/ja808172n PMID:19055353 PMCID:PMC2735399
- Zhou, H. Y., Wu, S. L., Joo, J. Y., Zhu, S. Y., Han, D. W., Lin, T. X., Trauger, S., Bien, G., Zhu, Y., Yao, S., Siuzdak, G. Generation of induced pluripotent stem cells using recombinant proteins Cell Stem Cell 2009 4:381-384 DOI:10.1016/j.stem.2009.04.005 PMID:19398399
- Bunner, A. E., Trauger, S. A., Siuzdak, G., Williamson, J. R. Quantitative ESI-TOF analysis of macromolecular assembly kinetics Analytical Chemistry 2008 80:9379-9386 DOI:10.1021/ac8020505 PMID:19007188 PMCID:PMC2735594
- Vallon, V., Eraly, S. A., Wikoff, W. R., Rieg, T., Kaler, G., Truong, D. M., Ahn, S. Y., Mahapatra, N. R., Mahata, S. K., Gangoiti, J. A., Wu, W., Barshop, B. A., et al. Organic anion transporter 3 contributes to the regulation of blood pressure Journal of the American Society of Nephrology 2008 19:1732-1740 DOI:10.1681/asn.2008020180 PMID:18508962 PMCID:PMC2518443
- Benton, H. P., Wong, D. M., Trauger, S. A., Siuzdak, G. XCMS2: Processing tandem mass spectrometry data for metabolite identification and structural characterization Analytical Chemistry 2008 80:6382-6389 DOI:10.1021/ac800795f PMID:18627180 PMCID:PMC2728033
- Wikoff, W. R., Pendyala, G., Siuzdak, G., Fox, H. S. Metabolomic analysis of the cerebrospinal fluid reveals changes in phospholipase expression in the CNS of SIV-infected macaques Journal of Clinical Investigation 2008 118:2661-2669 DOI:10.1172/jci34138 PMID:18521184 PMCID:PMC2398736
- Eraly, S. A., Vallon, V., Rieg, T., Gangoiti, J. A., Wikoff, W. R., Siuzdak, G., Barshop, B. A., Nigam, S. K. Multiple organic anion transporters contribute to net renal excretion of uric acid Physiological Genomics 2008 33:180-192 DOI:10.1152/physiolgenomics.00207.2007 PMID:18270321 PMCID:PMC3016923
- Northen, T. R., Lee, J. C., Hoang, L., Raymond, J., Hwang, D. R., Yannone, S. M., Wong, C. H., Siuzdak, G. A nanostructure-initiator mass spectrometry-based enzyme activity assay Proceedings of the National Academy of Sciences of the United States of America 2008 105:3678-3683 DOI:10.1073/pnas.0712332105 PMID:18319341 PMCID:PMC2268803
- Trauger, S. A., Kalisak, E., Kalisiak, J., Morita, H., Weinberg, M. V., Menon, A. L., Poole, F. L., Adams, M. W. W., Siuzdak, G. Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile Journal of Proteome Research 2008 7:1027-1035 DOI:10.1021/pr700609j PMID:18247545
- Nordstrom, A., Want, E., Northen, T., Lehtio, J., Siuzdak, G. Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics Analytical Chemistry 2008 80:421-429 DOI:10.1021/ac:701982e PMID:18085752
- O'Maille, G., Go, E. P., Hoang, L., Want, E. J., Smith, C., O'Maille, P., Nordstrom, A., Morita, H., Qin, C., Uritboonthai, W., Apon, J., Moore, R., et al. Metabolomics relative quantitation with mass spectrometry using chemical derivatization and isotope labeling Spectroscopy-an International Journal 2008 22:327-343 DOI:10.3233/spe-2008-0361
- Woo, H. K., Northen, T. R., Yanes, O., Siuzdak, G. Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis Nature Protocols 2008 3:1341-1349 DOI:10.1038/nprot.2008.110 PMID:18714302
- Wikoff, W. R., Gangoiti, J. A., Barshop, B. A., Siuzdak, G. Metabolomics identifies perturbations in human disorders of propionate metabolism Clinical Chemistry 2007 53:2169-2176 DOI:10.1373/clinchem.2007.089011 PMID:17951291
- Northen, T. R., Woo, H. K., Northen, M. T., Nordstrom, A., Uritboonthail, W., Turner, K. L., Siuzdak, G. High surface area of porous silicon drives desorption of intact molecules Journal of the American Society for Mass Spectrometry 2007 18:1945-1949 DOI:10.1016/j.jasms.2007.08.009 PMID:17881245 PMCID:PMC2080661
- Northen, T. R., Yanes, O., Northen, M. T., Marrinucci, D., Uritboonthai, W., Apon, J., Golledge, S. L., Nordstrom, A., Siuzdak, G. Clathrate nanostructures for mass spectrometry Nature 2007 449:1033-1036 DOI:10.1038/nature06195 PMID:17960240
- Lissauer, M. E., Johnson, S. B., Siuzdak, G., Bochicchio, G., Whiteford, C., Nussbaumer, B., Moore, R., Scalea, T. M. Coagulation and complement protein differences between septic and uninfected systemic inflammatory response syndrome patients Journal of Trauma-Injury Infection and Critical Care 2007 62:1082-1092 DOI:10.1097/TA.0b013e31804d23e1 PMID:17495706
- Pendyala, G., Want, E. J., Webb, W., Siuzdak, G., Fox, H. S. Biomarkers for neuroaids: The widening scope of metabolomics Journal of Neuroimmune Pharmacology 2007 2:72-80 DOI:10.1007/s11481-006-9041-3 PMID:18040828
- Want, E. J., Nordstrom, A., Morita, H., Siuzdak, G. From exogenous to endogenous: The inevitable imprint of mass spectrometry in metabolomics Journal of Proteome Research 2007 6:459-468 DOI:10.1021/pr060505+ PMID:17269703
- Mutch, D. M., O'Maille, G., Wikoff, W. R., Wiedmer, T., Sims, P. J., Siuzdak, G. Mobilization of pro-inflammatory lipids in obese plscr3-deficient mice Genome Biology 2007 8:R38 DOI:10.1186/gb-2007-8-3-r38 PMID:17355638 PMCID:PMC1868938
- Go, E. P., Uritboonthai, W., Apon, J. V., Trauger, S. A., Nordstrom, A., O'Maille, G., Brittain, S. M., Peters, E. C., Siuzdak, G. Selective metabolite and peptide capture/mass detection using fluorous affinity tags Journal of Proteome Research 2007 6:1492-1499 DOI:10.1021/pr060608s PMID:17343404 PMCID:PMC2530906
- Shen, Z. X., Want, E. J., Chen, W., Keating, W., Nussbaumer, W., Moore, R., Gentle, T. M., Siuzdak, G. Sepsis plasma protein profiling with immunodepletion, three-dimensional liquid chromatography tandem mass spectrometry, and spectrum counting Journal of Proteome Research 2006 5:3154-3160 DOI:10.1021/pr060327k PMID:17081067
- Go, E. P., Wikoff, W. R., Shen, Z. X., O'Maille, G., Morita, H., Conrads, T. P., Nordstrom, A., Trauger, S. A., Uritboonthai, W., Lucas, D. A., Chan, K. C., Veenstra, T. D., et al. Mass spectrometry reveals specific and global molecular transformations during viral infection Journal of Proteome Research 2006 5:2405-2416 DOI:10.1021/pr060215t PMID:16944953 PMCID:PMC2566936
- Want, E. J., Smith, C. A., Qin, C. A., VanHorne, K. C., Siuzdak, G. Phospholipid capture combined with non-linear chromatographic correction for improved serum metabolite profiling Metabolomics 2006 2:145-154 DOI:10.1007/s11306-006-0028-0
- Nordstrom, A., O'Maille, G., Qin, C., Siuzdak, G. Nonlinear data alignment for uplc-ms and hplc-ms based metabolomics: Quantitative analysis of endogenous and exogenous metabolites in human serum Analytical Chemistry 2006 78:3289-3295 DOI:10.1021/ac060245f PMID:16689529 PMCID:PMC3705959
- Want, E. J., O'Maille, G., Smith, C. A., Brandon, T. R., Uritboonthai, W., Qin, C., Trauger, S. A., Siuzdak, G. Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry Analytical Chemistry 2006 78:743-752 DOI:10.1021/ac051312t PMID:16448047
- Smith, C. A., Want, E. J., O'Maille, G., Abagyan, R., Siuzdak, G. Xcms: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification Analytical Chemistry 2006 78:779-787 DOI:10.1021/ac051437y PMID:16448051
- Steenwyk, R. C., Hutzler, J. M., Sams, J., Shen, Z. X., Siuzdak, G. Atmospheric pressure desorption/ionization on silicon ion trap mass spectrometry applied to the quantitation of midazolam in rat plasma and determination of midazolam 1 '-hydroxylation kinetics in human liver microsomes Rapid Communications in Mass Spectrometry 2006 20:3717-3722 DOI:10.1002/rcm.2796 PMID:17117443
- Lee, J. C., Wit, C. Y., Apon, J. V., Siuzdak, G., Wong, C. H. Reactivity-based one-pot synthesis of the tumor-associated antigen n3 minor octasaccharide for the development of a photocleavable dios-ms sugar array Angewandte Chemie-International Edition 2006 45:2753-2757 DOI:10.1002/anie.200504067 PMID:16548041
- Nordstrom, A., Apon, J. V., Uritboonthal, W., Go, E. P., Siuzdak, G. Surfactant-enhanced desorption/ionization on silicon mass spectrometry Analytical Chemistry 2006 78:272-278 DOI:10.1021/ac051398q PMID:16383337
- Luo, G. H., Chen, Y., Siuzdak, G., Vertes, A. Surface modification and laser pulse length effects on internal energy transfer in dios Journal of Physical Chemistry B 2005 109:24450-24456 DOI:10.1021/jp054311d PMID:16375447
- Talkington, M. W. T., Siuzdak, G., Williamson, J. R. An assembly landscape for the 30S ribosomal subunit Nature 2005 438:628-632 DOI:10.1038/nature04261 PMID:16319883 PMCID:PMC1444899
- Smith, C. A., O'Maille, G., Want, E. J., Qin, C., Trauger, S. A., Brandon, T. R., Custodio, D. E., Abagyan, R., Siuzdak, G. METLIN - a metabolite mass spectral database Therapeutic Drug Monitoring 2005 27:747-751 DOI:10.1097/01.ftd.0000179845.53213.39 PMID:16404815
- Want, E. J., Cravatt, B. F., Siuzdak, G. The expanding role of mass spectrometry in metabolite profiling and characterization ChemBioChem 2005 6:1941-1951 DOI:10.1002/cbic.200500151 PMID:16206229
- Lacy, E. R., Wang, Y. F., Post, J., Nourse, A., Webb, W., Mapelli, M., Musacchio, A., Siuzdak, G., Kriwacki, R. W. Molecular basis for the specificity of p27 toward cyclin-dependent kinases that regulate cell division Journal of Molecular Biology 2005 349:764-773 DOI:10.1016/j.jmb.2005.04.019 PMID:15890360
- Go, E. P., Apon, J. V., Luo, G. H., Saghatelian, A., Daniels, R. H., Sahi, V., Dubrow, R., Cravatt, B. F., Vertes, A., Siuzdak, G. Desorption/ionization on silicon nanowires Analytical Chemistry 2005 77:1641-1646 DOI:10.1021/ac048460o PMID:15762567
- Bothner, B., Taylor, D., Jun, B., Lee, K. K., Siuzdak, G., Schlutz, C. P., Johnson, J. E. Maturation of a tetravirus capsid alters the dynamic properties and creates a metastable complex Virology 2005 334:17-27 DOI:10.1016/j.virol.2005.01.017 PMID:15749119
- Lowe, R., Go, E. P., Tong, G. C., Voelcker, N. H., Siuzdak, G. Monitoring edta and endogenous metabolite biomarkers from serum with mass spectrometry Spectroscopy-an International Journal 2005 19:137-146
- Saghatelian, A., Trauger, S. A., Want, E. J., Hawkins, E. G., Siuzdak, G., Cravatt, B. F. Assignment of endogenous substrates to enzymes by global metabolite profiling Biochemistry 2004 43:14332-14339 DOI:10.1021/bi0480335 PMID:15533037
- Shen, Z. X., Thomas, J. J., Siuzdak, G., Blackledge, R. D. A case study on forensic polymer analysis by dios-ms: The suspect who gave us the slip (r) Journal of Forensic Sciences 2004 49:1028-1035 PMID:15461106
- Trauger, S. A., Wu, E., Bark, S. J., Nemerow, G. R., Siuzdak, G. The identification of an adenovirus receptor by using affinity capture and mass spectrometry ChemBioChem 2004 5:1095-1099 DOI:10.1002/cbic.200400037 PMID:15300833
- Trauger, S. A., Go, E. P., Shen, Z. X., Apon, J. V., Compton, B. J., Bouvier, E. S. P., Finn, M. G., Siuzdak, G. High sensitivity and analyte capture with desorption/ionization mass spectrometry on silylated porous silicon Analytical Chemistry 2004 76:4484-4489 DOI:10.1021/ac049657j PMID:15283591
- Shen, Z. X., Go, E. P., Gamez, A., Apon, J. V., Fokin, V., Greig, M., Ventura, M., Crowell, J. E., Blixt, O., Paulson, J. C., Stevens, R. C., Finn, M. G., et al. A mass spectrometry plate reader: monitoring enzyme activity and inhibition with a desorption/ionization on silicon (DIOS) platform ChemBioChem 2004 5:921-927 DOI:10.1002/cbic.200400008 PMID:15239048
- Wu, E., Trauger, S. A., Pache, L., Mullen, T. M., Von Seggern, D. J., Siuzdak, G., Nemerow, G. R. Membrane cofactor protein is a receptor for adenoviruses associated with epidemic keratoconjunctivitis Journal of Virology 2004 78:3897-3905 DOI:10.1128/jvi.78.8.3897-3905.2004 PMID:15047806
- Bothner, B., Siuzdak, G. Electrospray ionization of a whole virus: Analyzing mass, structure, and viability ChemBioChem 2004 5:258-260 DOI:10.1002/cbic.200300754 PMID:14997515
- Meng, J. C., Siuzdak, G., Finn, M. G. Affinity mass spectrometry from a tailored porous silicon surface Chemical Communications 2004 2108-2109 DOI:10.1039/b408200a
- Meng, J. C., Averbuj, C., Lewis, W. G., Siuzdak, G., Finn, M. G. Cleavable linkers for porous silicon-based mass spectrometry Angewandte Chemie-International Edition 2004 43:1255-1260 DOI:10.1002/anie.200352803 PMID:14991792
- Thomas, J. J., Bothner, B., Traina, J., Benner, W. H., Siuzdak, G. Electrospray ion mobility spectrometry of intact viruses Spectroscopy-an International Journal 2004 18:31-36
- Kriwacki, R., Reisdorph, N., Siuzdak, G. Protein structure characterization with mass spectrometry Spectroscopy-an International Journal 2004 18:37-47
- Go, E. P., Shen, Z. X., Harris, K., Siuzdak, G. Quantitative analysis with desorption/ionization on silicon mass spectrometry using electrospray deposition Analytical Chemistry 2003 75:5475-5479 DOI:10.1021/ac034376h PMID:14710827
- Reisdorph, N., Thomas, J. J., Katpally, U., Chase, E., Harris, K., Siuzdak, G., Smith, T. J. Human rhinovirus capsid dynamics is controlled by canyon flexibility Virology 2003 314:34-44 DOI:10.1016/s0042-6822(03)00452-5 PMID:14517058
- Go, E. P., Prenni, J. E., Wei, J., Jones, A., Hall, S. C., Witkowska, H. E., Shen, Z. X., Siuzdak, G. Desorption/ionization on silicon time-of-flight/time-of-flight mass spectrometry Analytical Chemistry 2003 75:2504-2506 DOI:10.1021/ac026253n PMID:12918997
- Yao, S., Meng, J. C., Siuzdak, G., Finn, M. G. New catalysts for the asymmetric hydrosilylation of ketones discovered by mass spectrometry screening Journal of Organic Chemistry 2003 68:2540-2546 DOI:10.1021/jo026365e PMID:12662022
- Lewis, W. G., Shen, Z. X., Finn, M. G., Siuzdak, G. Desorption/ionization on silicon (DIOS) mass spectrometry: background and applications International Journal of Mass Spectrometry 2003 226:107-116 DOI:10.1016/s1387-3806(02)00973-9
- Trauger, S. A., Junker, T., Siuzdak, G. Investigating viral proteins and intact viruses with mass spectrometry Modern Mass Spectrometry 2003 225:265-282 DOI:10.1007/b10476
- Want, E., Greig, M., Compton, B., Bolanos, B., Siuzdak, G. Mass spectrometry in high throughput analysis Spectroscopy-an International Journal 2003 17:663-680
- Compton, B. J., Siuzdak, G. Mass spectrometry in nucleic acid, carbohydrate and steroid analysis Spectroscopy-an International Journal 2003 17:699-713
- Prenni, J. E., Shen, Z. X., Trauger, S., Chen, W., Siuzdak, G. Protein characterization using liquid chromatography desorption ionization on silicon mass spectrometry (lc-dios-ms) Spectroscopy-an International Journal 2003 17:693-698
- Meyers, A., Trauger, S., Webb, W., Reisdorph, N., Wranik, C., Peters, E., Siuzdak, G. Protein identification and profiling with mass spectrometry Spectroscopy-an International Journal 2003 17:1-15
- Want, E., Compton, B. J., Hollenbeck, T., Siuzdak, G. The application of mass spectrometry in pharmacokinetics studies Spectroscopy-an International Journal 2003 17:681-691
- Smith, T. J., Schmidt, T., Fang, J., Wu, J., Siuzdak, G., Stanley, C. A. The structure of apo human glutamate dehydrogenase details subunit communication and allostery Journal of Molecular Biology 2002 318:765-777 DOI:10.1016/s0022-2836(02)00161-4 PMID:12054821
- Sonderegger, M., Staniszewski, K., Meyers, A., Siuzdak, G. A bioinformatics approach for mass spectrometry data processing: Applications to proteomics and small molecule analysis Spectroscopy-an International Journal 2002 16:81-87
- Bothner, B., Carmitchel, L., Staniszewski, K., Sonderegger, M., Siuzdak, G. Biomolecule structure characterization in the gas phase using mass spectrometry Spectroscopy-an International Journal 2002 16:71-79
- Trauger, S. A., Webb, W., Siuzdak, G. Peptide and protein analysis with mass spectrometry Spectroscopy-an International Journal 2002 16:15-28
- Thomas, J. J., Shen, Z. X., Blackledge, R., Siuzdak, G. Desorption-ionization on silicon mass spectrometry: An application in forensics Analytica Chimica Acta 2001 442:183-190 DOI:10.1016/s0003-2670(01)01107-2
- Thomas, J. J., Shen, Z. X., Crowell, J. E., Finn, M. G., Siuzdak, G. Desorption/ionization on silicon (dios): A diverse mass spectrometry platform for protein characterization Proceedings of the National Academy of Sciences of the United States of America 2001 98:4932-4937 DOI:10.1073/pnas.081069298 PMID:11296246 PMCID:PMC33141
- Bark, S. J., Muster, N., Yates, J. R., Siuzdak, G. High-temperature protein mass mapping using a thermophilic protease Journal of the American Chemical Society 2001 123:1774-1775 DOI:10.1021/ja002909n PMID:11456785
- Broo, K., Wei, J., Marshall, D., Brown, F., Smith, T. J., Johnson, J. E., Schneemann, A., Siuzdak, G. Viral capsid mobility: A dynamic conduit for inactivation Proceedings of the National Academy of Sciences of the United States of America 2001 98:2274-2277 DOI:10.1073/pnas.051598298 PMID:11226229 PMCID:PMC30128
- Shen, Z. X., Thomas, J. J., Averbuj, C., Broo, K. M., Engelhard, M., Crowell, J. E., Finn, M. G., Siuzdak, G. Porous silicon as a versatile platform for laser desorption/ionization mass spectrometry Analytical Chemistry 2001 73:612-619 DOI:10.1021/ac000746f PMID:11217770
- Shen, Z. X., Yao, S. L., Crowell, J. E., Siuzdak, G., Finn, M. G. Dios-mseed: A chip-based method for measurement of enantiomeric excess by kinetic resolution/mass spectrometry Israel Journal of Chemistry 2001 41:313-316 DOI:10.1560/tbxu-fd8h-fhm1-nr8h
- Fuerstenau, S. D., Benner, W. H., Thomas, J. J., Brugidou, C., Bothner, B., Siuzdak, G. Mass spectrometry of an intact virus Angewandte Chemie-International Edition 2001 40:542-544
- Bothner, B., Chavez, R., Wei, J., Strupp, C., Phung, Q., Schneemann, A., Siuzdak, G. Monitoring enzyme catalysis with mass spectrometry Journal of Biological Chemistry 2000 275:13455-13459 DOI:10.1074/jbc.275.18.13455 PMID:10788458
- Thomas, J. J., Bakhtiar, R., Siuzdak, G. Mass spectrometry in viral proteomics Accounts of Chemical Research 2000 33:179-187 DOI:10.1021/ar9801200 PMID:10727207
- Yang, C. Y., Gu, Z. W., Yang, M. L., Lin, S. N., Siuzdak, G., Smith, C. V. Identification of modified tryptophan residues in apolipoprotein b-100 derived from copper ion-oxidized low-density lipoprotein Biochemistry 1999 38:15903-15908 DOI:10.1021/bi991464g PMID:10625456
- Hollenbeck, T. P. E., Siuzdak, G., Blackledge, R. D. Electrospray and maldi mass spectrometry in the identification of spermicides in criminal investigations Journal of Forensic Sciences 1999 44:783-788 PMID:10432613
- Chatman, K., Hollenbeck, T., Hagey, L., Vallee, M., Purdy, R., Weiss, F., Siuzdak, G. Nanoelectrospray mass spectrometry and precursor ion monitoring for quantitative steroid analysis and attomole sensitivity Analytical Chemistry 1999 71:2358-2363 DOI:10.1021/ac9806411 PMID:10405603
- Schalley, C. A., Rivera, J. M., Martin, T., Santamaria, J., Siuzdak, G., Rebek, J. Structural examination of supramolecular architectures by electrospray ionization mass spectrometry European Journal of Organic Chemistry 1999 1999:1325-1331 DOI:10.1002/(SICI)1099-0690(199906)1999:6<1325::AID-EJOC1325>3.0.CO;2-6
- Wei, J., Buriak, J. M., Siuzdak, G. Desorption-ionization mass spectrometry on porous silicon Nature 1999 399:243-246 PMID:10353246
- Schalley, C. A., Castellano, R. K., Brody, M. S., Rudkevich, D. M., Siuzdak, G., Rebek, J. Investigating molecular recognition by mass spectrometry: Characterization of calixarene-based self-assembling capsule hosts with charged guests Journal of the American Chemical Society 1999 121:4568-4579 DOI:10.1021/ja990276a
- Bothner, B., Schneemann, A., Marshall, D., Reddy, V., Johnson, J. E., Siuzdak, G. Crystallographically identical virus capsids display different properties in solution Nature Structural Biology 1999 6:114-116 PMID:10048920
- Takayama, S., Chung, S. J., Igarashi, Y., Ichikawa, Y., Sepp, A., Lechler, R. I., Wu, J., Hayashi, T., Siuzdak, G., Wong, C. H. Selective inhibition of β-1,4- and α-1,3-galactosyltransferases: donor sugar-nucleotide based approach Bioorganic & Medicinal Chemistry 1999 7:401-409 DOI:10.1016/s0968-0896(98)00249-1 PMID:10218835
- Marmey, P., Bothner, B., Jacquot, E., de Kochko, A., Ong, C. A., Yot, P., Siuzdak, G., Beachy, R. N., Fauquet, C. M. Rice tungro bacilliform virus open reading frame 3 encodes a single 37-kda coat protein Virology 1999 253:319-326 DOI:10.1006/viro.1998.9519 PMID:9918890
- Guo, J. H., Wu, J., Siuzdak, G., Finn, M. G. Measurement of enantiomeric excess by kinetic resolution and mass spectrometry Angewandte Chemie-International Edition 1999 38:1755-1758 DOI:10.1002/(sici)1521-3773(19990614)38:12<1755::aid-anie1755>3.3.co;2-h
- Tsui, V., Garcia, C., Cavagnero, S., Siuzdak, G., Dyson, H. J., Wright, P. E. Quench-flow experiments combined with mass spectrometry show apomyoglobin folds through an obligatory intermediate Protein Science 1999 8:45-49 DOI:10.1110/ps.8.1.45 PMID:10210182 PMCID:PMC2144105
- Owens, D. R., Bothner, B., Phung, Q., Harris, K., Siuzdak, G. Aspects of oligonucleotide and peptide sequencing with maldi and electrospray mass spectrometry Bioorganic & Medicinal Chemistry 1998 6:1547-1554 DOI:10.1016/s0968-0896(98)00098-4 PMID:9801826
- Lewis, J. K., Bendahmane, M., Smith, T. J., Beachy, R. N., Siuzdak, G. Identification of viral mutants by mass spectrometry Proceedings of the National Academy of Sciences of the United States of America 1998 95:8596-8601 DOI:10.1073/pnas.95.15.8596 PMID:9671723
- Lewis, J. K., Bothner, B., Smith, T. J., Siuzdak, G. Antiviral agent blocks breathing of the common cold virus Proceedings of the National Academy of Sciences of the United States of America 1998 95:6774-6778 DOI:10.1073/pnas.95.12.6774 PMID:9618488
- Siuzdak, G. What's your frequently asked mass spec question? R&D Magazine 1998 40:37-37
- Siuzdak, G. Probing viruses with mass spectrometry Journal of Mass Spectrometry 1998 33:203-211 DOI:10.1002/(sici)1096-9888(199803)33:3<203::aid-jms653>3.0.co;2-q PMID:9538522
- Bothner, B., Dong, X. F., Bibbs, L., Johnson, J. E., Siuzdak, G. Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry Journal of Biological Chemistry 1998 273:673-676 DOI:10.1074/jbc.273.2.673 PMID:9422714
- Wu, J., Chatman, K., Harris, K., Siuzdak, G. An automated maldi mass spectrometry approach for optimizing cyclosporin extraction and quantitation Analytical Chemistry 1997 69:3767-3771 DOI:10.1021/ac970276y PMID:9302875
- Takayama, S., Martin, R., Wu, J., Laslo, K., Siuzdak, G., Wong, C. H. Chemoenzymatic preparation of novel cyclic imine sugars and rapid biological activity evaluation using electrospray mass spectrometry and kinetic analysis Journal of the American Chemical Society 1997 119:8146-8151 DOI:10.1021/ja971695f
- Wu, J., Takayama, S., Wong, C. H., Siuzdak, G. Quantitative electrospray mass spectrometry for the rapid assay of enzyme inhibitors Chemistry & Biology 1997 4:653-657 DOI:10.1016/s1074-5521(97)90220-9 PMID:9331404
- Kriwacki, R. W., Wu, J., Tennant, L., Wright, P. E., Siuzdak, G. Probing protein structure using biochemical and biophysical methods - proteolysis, matrix-assisted laser desorption/ionization mass spectrometry, high-performance liquid chromatography and size-exclusion chromatography of p21(waf1/cip1/sdi1) Journal of Chromatography A 1997 777:23-30 DOI:10.1016/s0021-9673(97)00527-x PMID:9297835
- Fitzgerald, M. C., Siuzdak, G. Biochemical mass spectrometry: Worth the weight? Chemistry & Biology 1996 3:707-715 DOI:10.1016/s1074-5521(96)90245-8 PMID:8939685
- Kriwacki, R. W., Wu, J., Siuzdak, G., Wright, P. E. Probing protein/protein interactions with mass spectrometry and isotopic labeling: Analysis of the p21/cdk2 complex Journal of the American Chemical Society 1996 118:5320-5321 DOI:10.1021/ja960752m
- Fitzgerald, M. C., Harris, K., Shevlin, C. G., Siuzdak, G. Direct characterization of solid phase resin-bound molecules by mass spectrometry Bioorganic & Medicinal Chemistry Letters 1996 6:979-982 DOI:10.1016/0960-894x(96)00152-7
- Chang, H. T., Chen, C. T., Kondo, T., Siuzdak, G., Sharpless, K. B. Asymmetric dihydroxylation enables rapid construction of chiral dendrimers based on 1,2-diols Angewandte Chemie-International Edition 1996 35:182-186 DOI:10.1002/anie.199601821
- Siuzdak, G., Bothner, B., Yeager, M., Brugidou, C., Fauquet, C. M., Hoey, K., Chang, C. M. Mass spectrometry and viral analysis Chemistry & Biology 1996 3:45-48 DOI:10.1016/s1074-5521(96)90083-6 PMID:8807827
- Bothner, B., Chatman, K., Sarkisian, M., Siuzdak, G. Liquid-chromatography mass-spectrometry of antisense oligonucleotides Bioorganic & Medicinal Chemistry Letters 1995 5:2863-2868 DOI:10.1016/0960-894x(95)00499-j
- Cravatt, B. F., Prosperogarcia, O., Siuzdak, G., Gilula, N. B., Henriksen, S. J., Boger, D. L., Lerner, R. A. Chemical characterization of a family of brain lipids that induce sleep Science 1995 268:1506-1509 DOI:10.1126/science.7770779 PMID:7770779
- Krebs, J. F., Siuzdak, G., Dyson, H. J., Stewart, J. D., Benkovic, S. J. Detection of a catalytic antibody species acylated at the active site by electrospray mass spectrometry Biochemistry 1995 34:720-723 DOI:10.1021/bi00003a002 PMID:7827028
- Siuzdak, G., Bothner, B. Gas-phase micelles Angewandte Chemie-International Edition 1995 34:2053-2055 DOI:10.1002/anie.199520531
- Siuzdak, G., Zheng, Z. L., Rhamphal, J. Y., Ichikawa, Y., Nicolaou, K. C., Gaeta, F. C. A., Chatman, K. S., Wong, C. H. Examination of the sialyl-lewis-x calcium complex by electrospray mass-spectrometry Bioorganic & Medicinal Chemistry Letters 1994 4:2863-2866 DOI:10.1016/s0960-894x(01)80829-5
- Crano, J., Knowles, D., Kwiatkowski, P., Flood, T., Ross, R., Chiang, L., Lasch, J., Chadha, R., Siuzdak, G. Structure of three novel photochromic compounds; X-ray crystallographic and theoretical studies Acta Crystallographica Section B-Structural Science 1994 50:772-779 DOI:10.1107/s0108768194005938
- Siuzdak, G. The emergence of mass-spectrometry in biochemical-research Proceedings of the National Academy of Sciences of the United States of America 1994 91:11290-11297 DOI:10.1073/pnas.91.24.11290 PMID:7972052
- Lerner, R. A., Siuzdak, G., Prosperogarcia, O., Henriksen, S. J., Boger, D. L., Cravatt, B. F. Cerebrodiene: A brain lipid isolated from sleep-deprived cats Proceedings of the National Academy of Sciences of the United States of America 1994 91:9505-9508 DOI:10.1073/pnas.91.20.9505 PMID:7937797 PMCID:PMC44841
- Siuzdak, G., Krebs, J. F., Benkovic, S. J., Dyson, H. J. Binding of hapten to a single chain catalytic antibody demonstrated by electrospray mass spectrometry Journal of the American Chemical Society 1994 116:7937-7938 DOI:10.1021/ja00096a077
- Stewart, J. D., Krebs, J. F., Siuzdak, G., Berdis, A. J., Smithrud, D. B., Benkovic, S. J. Dissection of an antibody-catalyzed reaction Proceedings of the National Academy of Sciences of the United States of America 1994 91:7404-7409 DOI:10.1073/pnas.91.16.7404 PMID:8052597
- Rideout, D., Bustamante, A., Siuzdak, G. Cationic drug analysis using matrix-assisted laser-desorption ionization mass-spectrometry - application to influx kinetics, multidrug-resistance, and intracellular chemical-change Proceedings of the National Academy of Sciences of the United States of America 1993 90:10226-10229 DOI:10.1073/pnas.90.21.10226 PMID:8234281
- Siuzdak, G., Ichikawa, Y., Caulfield, T. J., Munoz, B., Wong, C. H., Nicolaou, K. C. Evidence of ca2+-dependent carbohydrate association through ion spray mass-spectrometry Journal of the American Chemical Society 1993 115:2877-2881 DOI:10.1021/ja00060a040
- Siuzdak, G., Wendeborn, S. V., Nicolaou, K. C. Cationization of organometallo carbonyl compounds by fast ion bombardment International Journal of Mass Spectrometry and Ion Processes 1992 112:79-91 DOI:10.1016/0168-1176(92)87033-b
- Siuzdak, G., North, S., Belbruno, J. J. Multiphoton ionization of phenol in nonaqueous solutions - characterization of the cation and ion molecule chemistry Journal of Physical Chemistry 1991 95:5186-5190 DOI:10.1021/j100166a050
- Siuzdak, G., Belbruno, J. J. Multiphoton ionization of nitrobenzene in nonaqueous solutions - characterization of the cation and ion-molecule chemistry Laser Chemistry 1991 11:83-93 DOI:10.1155/lc.11.83
- Belbruno, J. J., Siuzdak, G. Rempi-ms - application to the study of the gas-phase dynamics of radical cations Institute of Physics Conference Series 1991 177-180
- Belbruno, J. J., Siuzdak, G. Resonant ionization in solution - initiation of ion-molecule chemistry by rempi Institute of Physics Conference Series 1991 351-354
- Siuzdak, G., Belbruno, J. J. Laser multiphoton dissociation ionization of butylamines - competitive processes in radical cations Journal of Physical Chemistry 1990 94:4559-4565 DOI:10.1021/j100374a038
- Siuzdak, G., Belbruno, J. J. Multiphoton ionization studies of amines with uv-vis lasers Applied Physics B-Photophysics and Laser Chemistry 1990 50:221-226 DOI:10.1007/bf00357287
- Belbruno, J. J., Siuzdak, G., North, S. Multiphoton-induced chemistry of phenol in hexane at 266 nm Chemical Physics Letters 1990 166:167-172 DOI:10.1016/0009-2614(90)87271-r
- Belbruno, J. J., Siuzdak, G., North, S. Uv multiphoton induced chemistry of nitrobenzene in solution Laser Chemistry 1990 10:177-184 DOI:10.1155/1990/42676
- Marzzacco, C. J., Deckey, G., Colarulli, R., Siuzdak, G., Halpern, A. M. Excited-state protonation and photophysical properties of azaphenanthrenes Journal of Physical Chemistry 1989 93:2935-2939 DOI:10.1021/j100345a018