recent publications
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academic article
- Kouril, D., Cmolik, L., Kozlikova, B., Wu, H. Y., Johnson, G., Goodsell, D. S., Olson, A., Groller, M. E., Viola, I. Labels on levels: labeling of multi-scale multi-instance and crowded 3D biological environments IEEE Transactions on Visualization and Computer Graphics 2019 25:977-986 DOI:10.1109/tvcg.2018.2864491 PMID:30130195
- Mindek, P., Kouril, D., Sorger, J., Toloudis, D., Lyons, B., Johnson, G., Groller, M. E., Viola, I. Visualization multi-pipeline for communicating biology IEEE Transactions on Visualization and Computer Graphics 2018 24:883-892 DOI:10.1109/tvcg.2017.2744518 PMID:28866552
- Fritz-Laylin, L. K., Riel-Mehan, M., Chen, B. C., Lord, S. J., Goddard, T. D., Ferrin, T. E., Nicholson-Dykstra, S. M., Higgs, H., Johnson, G. T., Betzig, E., Mullins, R. D. Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes Elife 2017 6 DOI:10.7554/eLife.26990 PMID:28948912 PMCID:PMC5614560
- Sisto, A., Stross, C., van der Kamp, M. W., O'Connor, M., McIntosh-Smith, S., Johnson, G. T., Hohenstein, E. G., Manby, F. R., Glowacki, D. R., Martinez, T. J. Atomistic non-adiabatic dynamics of the LH2 complex with a GPU-accelerated ab initio exciton model Physical Chemistry Chemical Physics 2017 19:14924-14936 DOI:10.1039/c7cp00492c PMID:28430270
- Bhabha, G., Johnson, G. T., Schroeder, C. M., Vale, R. D. How Dynein Moves Along Microtubules Trends in Biochemical Sciences 2016 41:94-105 DOI:10.1016/j.tibs.2015.11.004 PMID:26678005 PMCID:PMC4706479
- Hertig, S., Goddard, T. D., Johnson, G. T., Ferrin, T. E. Multidomain assembler (MDA) generates models of large multidomain proteins Biophysical Journal 2015 108:2097-2102 DOI:10.1016/j.bpj.2015.03.051 PMID:25954868 PMCID:PMC4423039
- Sali, A., Berman, H. M., Schwede, T., Trewhella, J., Kleywegt, G., Burley, S. K., Markley, J., Nakamura, H., Adams, P., Bonvin, Amjj, Chiu, W., Dal Peraro, M., et al. Outcome of the first wwPDB Hybrid/Integrative Methods Task Force Workshop Structure 2015 23:1156-1167 DOI:10.1016/j.str.2015.05.013 PMID:26095030
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Johnson, G. T., Autin, L., Al-Alusi, M., Goodsell, D. S., Sanner, M. F., Olson, A. J.
cellPACK: a virtual mesoscope to model and visualize structural systems biology
Nature Methods
2015
12:85-91
DOI:10.1038/nmeth.3204
PMID:25437435
PMCID:PMC4281296
- Johnson, G. T., Hertig, S. A guide to the visual analysis and communication of biomolecular structural data Nature Reviews Molecular Cell Biology 2014 15:690-698 DOI:10.1038/nrm3874 PMID:25245078
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Johnson, G. T., Goodsell, D. S., Autin, L., Sanner, M. F., Olson, A. J.
3D molecular models of whole HIV-1 virions generated with cellPACK
Faraday Discussions
2014
169:23-44
DOI:10.1039/c4fd00017j
PMID:25253262
PMCID:PMC4569901
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Autin, L., Johnson, G., Hake, J., Olson, A., Sanner, M.
uPy: a ubiquitous CG Python API with biological-modeling applications
IEEE Computer Graphics and Applications
2012
32:50-61
DOI:10.1109/MCG.2012.93
PMID:24806987
PMCID:PMC4590990
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Al-Amoudi, A., Castano-Diez, D., Devos, D. P., Russell, R. B., Johnson, G. T., Frangakis, A. S.
The three-dimensional molecular structure of the desmosomal plaque
Proceedings of the National Academy of Sciences of the United States of America
2011
108:6480-6485
DOI:10.1073/pnas.1019469108
PMID:21464301
PMCID:PMC3081036
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Johnson, G. T., Olson, A. J., Sanner, M. F., Goodsell, D. S., Autin, L.
ePMV embeds molecular modeling into professional animation software environments
Structure
2011
19:293-303
DOI:10.1016/j.str.2010.12.023
PMID:21397181
PMCID:PMC3101797
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Goodsell, D. S., Johnson, G. T.
Filling in the gaps: Artistic license in education and outreach
PLoS Biology
2007
5:2759-2762
DOI:10.1371/journal.pbio.0050308
PMID:18052608
PMCID:PMC2121112