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Johnson, Graham
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Johnson, Graham

Graduate Student
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Positions

  • 2015 - Director, Animated Cell, Allen Institute for Cell Science
  • 2014 - Scientific Director, Vessel Studios
  • 2012 - Assistant Researcher, School of Pharmacy, University of California, San Francisco
  • 1996 - Freelance Medical Illustrator, Graham Johnson Medical Media and fiVth.com
  • 2011 - 2012 Postdoctoral Associate, Scripps Research

Websites

  • Doctoral Dissertation
  • autoPACK
  • Wikipedia
  • Publications
  • Background
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Publications

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  • academic article

    • Kouril, D., Cmolik, L., Kozlikova, B., Wu, H. Y., Johnson, G., Goodsell, D. S., Olson, A., Groller, M. E., Viola, I. Labels on levels: labeling of multi-scale multi-instance and crowded 3D biological environments IEEE Transactions on Visualization and Computer Graphics  2019 25:977-986  DOI:10.1109/tvcg.2018.2864491  PMID:30130195
    • Mindek, P., Kouril, D., Sorger, J., Toloudis, D., Lyons, B., Johnson, G., Groller, M. E., Viola, I. Visualization multi-pipeline for communicating biology IEEE Transactions on Visualization and Computer Graphics  2018 24:883-892  DOI:10.1109/tvcg.2017.2744518  PMID:28866552
    • Fritz-Laylin, L. K., Riel-Mehan, M., Chen, B. C., Lord, S. J., Goddard, T. D., Ferrin, T. E., Nicholson-Dykstra, S. M., Higgs, H., Johnson, G. T., Betzig, E., Mullins, R. D. Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes Elife  2017 6  DOI:10.7554/eLife.26990  PMID:28948912  PMCID:PMC5614560
    • Sisto, A., Stross, C., van der Kamp, M. W., O'Connor, M., McIntosh-Smith, S., Johnson, G. T., Hohenstein, E. G., Manby, F. R., Glowacki, D. R., Martinez, T. J. Atomistic non-adiabatic dynamics of the LH2 complex with a GPU-accelerated ab initio exciton model Physical Chemistry Chemical Physics  2017 19:14924-14936  DOI:10.1039/c7cp00492c  PMID:28430270
    • Bhabha, G., Johnson, G. T., Schroeder, C. M., Vale, R. D. How Dynein Moves Along Microtubules Trends in Biochemical Sciences  2016 41:94-105  DOI:10.1016/j.tibs.2015.11.004  PMID:26678005  PMCID:PMC4706479
    • Hertig, S., Goddard, T. D., Johnson, G. T., Ferrin, T. E. Multidomain assembler (MDA) generates models of large multidomain proteins Biophysical Journal  2015 108:2097-2102  DOI:10.1016/j.bpj.2015.03.051  PMID:25954868  PMCID:PMC4423039
    • Sali, A., Berman, H. M., Schwede, T., Trewhella, J., Kleywegt, G., Burley, S. K., Markley, J., Nakamura, H., Adams, P., Bonvin, Amjj, Chiu, W., Dal Peraro, M., et al. Outcome of the first wwPDB Hybrid/Integrative Methods Task Force Workshop Structure  2015 23:1156-1167  DOI:10.1016/j.str.2015.05.013  PMID:26095030
    • degree-related publication Johnson, G. T., Autin, L., Al-Alusi, M., Goodsell, D. S., Sanner, M. F., Olson, A. J. cellPACK: a virtual mesoscope to model and visualize structural systems biology Nature Methods  2015 12:85-91  DOI:10.1038/nmeth.3204  PMID:25437435  PMCID:PMC4281296
    • Johnson, G. T., Hertig, S. A guide to the visual analysis and communication of biomolecular structural data Nature Reviews Molecular Cell Biology  2014 15:690-698  DOI:10.1038/nrm3874  PMID:25245078
    • degree-related publication Johnson, G. T., Goodsell, D. S., Autin, L., Sanner, M. F., Olson, A. J. 3D molecular models of whole HIV-1 virions generated with cellPACK Faraday Discussions  2014 169:23-44  DOI:10.1039/c4fd00017j  PMID:25253262  PMCID:PMC4569901
    • degree-related publication Autin, L., Johnson, G., Hake, J., Olson, A., Sanner, M. uPy: a ubiquitous CG Python API with biological-modeling applications IEEE Computer Graphics and Applications  2012 32:50-61  DOI:10.1109/MCG.2012.93  PMID:24806987  PMCID:PMC4590990
    • degree-related publication Al-Amoudi, A., Castano-Diez, D., Devos, D. P., Russell, R. B., Johnson, G. T., Frangakis, A. S. The three-dimensional molecular structure of the desmosomal plaque Proceedings of the National Academy of Sciences of the United States of America  2011 108:6480-6485  DOI:10.1073/pnas.1019469108  PMID:21464301  PMCID:PMC3081036
    • degree-related publication Johnson, G. T., Olson, A. J., Sanner, M. F., Goodsell, D. S., Autin, L. ePMV embeds molecular modeling into professional animation software environments Structure  2011 19:293-303  DOI:10.1016/j.str.2010.12.023  PMID:21397181  PMCID:PMC3101797
    • degree-related publication Goodsell, D. S., Johnson, G. T. Filling in the gaps: Artistic license in education and outreach PLoS Biology  2007 5:2759-2762  DOI:10.1371/journal.pbio.0050308  PMID:18052608  PMCID:PMC2121112
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Background

education and training

  • Ph.D. in Biology, Scripps Research 2005 - 2011
  • M.A. in Art as Applied to Medicine, Johns Hopkins University 1995 - 1997
  • B.A. in Scientific Illustration, St. Mary's College of Maryland 1991 - 1995

credentials

  • Certified Medical Illustrator (CMI)

advisee of

  • graduate advising relationship

    • Olson, Arthur, Ph.D.  candidacy, 2006 - 2011
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Contact

full name

  • Graham Thomas Johnson

geographic location

  • Scripps California 

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