recent publications
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academic article
- Pedmale, U. V., Huang, S. S. C., Zander, M., Cole, B. J., Hetzel, J., Ljung, K., Reis, P. A. B., Sridevi, P., Nito, K., Nery, J. R., Ecker, J. R., Chory, J. Cryptochromes interact directly with PIFs to control plant growth in limiting blue light Cell 2016 164:233-245 DOI:10.1016/j.cell.2015.12.018 PMID:26724867 PMCID:PMC4721562
- Brustolini, O. J. B., Machado, J. P. B., Condori-Apfata, J. A., Coco, D., Deguchi, M., Loriato, V. A. P., Pereira, W. A., Alfenas-Zerbini, P., Zerbini, F. M., Inoue-Nagata, A. K., Santos, A. A., Chory, J., et al. Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants Plant Biotechnology Journal 2015 13:1300-1311 DOI:10.1111/pbi.12349 PMID:25688422 PMCID:PMC4857726
- Kaiserli, E., Paldi, K., O'Donnell, L., Batalov, O., Pedmale, U. V., Nusinow, D. A., Kay, S. A., Chory, J. Integration of light and photoperiodic signaling in transcriptional nuclear foci Developmental Cell 2015 35:311-321 DOI:10.1016/j.devcel.2015.10.008 PMID:26555051 PMCID:PMC4654455
- Woodson, J. D., Joens, M. S., Sinson, A. B., Gilkerson, J., Salom, P. A., Weigel, D., Fitzpatrick, J. A., Chory, J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts Science 2015 350:450-454 DOI:10.1126/science.aac7444 PMID:26494759 PMCID:PMC4863637
- Willige, B. C., Chory, J. A current perspective on the role of AGCVIII kinases in PIN-mediated apical hook development Frontiers in Plant Science 2015 6 DOI:10.3389/fpls.2015.00767 PMID:26500658 PMCID:PMC4593951
- Yu, J., Qiu, H., Liu, X., Wang, M., Gao, Y., Chory, J., Tao, Y. Characterization of tub4(P287L) , a β-tubulin mutant, revealed new aspects of microtubule regulation in shade Journal of Integrative Plant Biology 2015 57:757-769 DOI:10.1111/jipb.12363 PMID:25899068 PMCID:PMC4779058
- Wudick, M. M., Li, X., Valentini, V., Geldner, N., Chory, J., Lin, J., Maurel, C., Luu, D. T. Subcellular redistribution of root aquaporins induced by hydrogen peroxide Molecular Plant 2015 8:1103-1114 DOI:10.1016/j.molp.2015.02.017 PMID:25749111
- Zorzatto, C., Machado, J. P. B., Lopes, K. V. G., Nascimento, K. J. T., Pereira, W. A., Brustolini, O. J. B., Reis, P. A. B., Calil, I. P., Deguchi, M., Sachetto-Martins, G., Gouveia, B. C., Loriato, V. A. P., et al. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism Nature 2015 520:679-682 DOI:10.1038/nature14171 PMID:25707794 PMCID:PMC4779052
- Martins, S., Dohmann, E. M. N., Cayrel, A., Johnson, A., Fischer, W., Pojer, F., Satiat-Jeunemaitre, B., Jaillais, Y., Chory, J., Geldner, N., Vert, G. Internalization and vacuolar targeting of the brassinosteroid hormone receptor BRI1 are regulated by ubiquitination Nature Communications 2015 6 DOI:10.1038/ncomms7151 PMID:25608221 PMCID:PMC4713032
- Belkhadirl, Y., Yang, L., Hetzel, J., Dangl, J. L., Chory, J. The growth-defense pivot: crisis management in plants mediated by LRR-RK surface receptors Trends in Biochemical Sciences 2014 39:447-456 DOI:10.1016/j.tibs.2014.06.006 PMID:25089011 PMCID:PMC4177940
- Krzymuski, M., Cerdan, P. D., Zhu, L., Vinh, A., Chory, J., Huq, E., Casal, J. J. Phytochrome A Antagonizes PHYTOCHROME INTERACTING FACTOR 1 to Prevent Over-Activation of Photomorphogenesis Molecular Plant 2014 7:1415-1428 DOI:10.1093/mp/ssu078 PMID:25009301
- Procko, C., Crenshaw, C. M., Ljung, K., Noel, J. P., Chory, J. Cotyledon-generated auxin is required for shade-induced hypocotyl growth in Brassica rapa Plant Physiology 2014 165:1285-1301 DOI:10.1104/pp.114.241844 PMID:24891610 PMCID:PMC4081337
- Zheng, Z., de Saint Germain, A., Chory, J. Unfolding the mysteries of strigolactone signaling Molecular Plant 2014 7:934-936 DOI:10.1093/mp/ssu021 PMID:24623790 PMCID:PMC4040469
- Zhong, X., Du, J., Hale, C. J., Gallego-Bartolome, J., Feng, S., Vashisht, A. A., Chory, J., Wohlschlegel, J. A., Patel, D. J., Jacobsen, S. E. Molecular mechanism of action of plant DRM de novo DNA methyltransferases Cell 2014 157:1050-1060 DOI:10.1016/j.cell.2014.03.056 PMID:24855943 PMCID:PMC4123750
- Gerald, J. N. F., Carlson, A. L., Smith, E., Maloof, J. N., Weigel, D., Chory, J., Borevitz, J. O., Swanson, R. J. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating Plant Physiology 2014 165:175-185 DOI:10.1104/pp.113.233213 PMID:24623850 PMCID:PMC4012578
- Li, L., Zhang, Q., Pedmale, U. V., Nito, K., Fu, W., Lin, L., Hazen, S. P., Chory, J. PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade Molecular Plant 2014 7:1582-1585 DOI:10.1093/mp/ssu068 PMID:24895419 PMCID:PMC4271063
- Simon, M. L. A., Platre, M. P., Assil, S., van Wijk, R., Chen, W. Y., Chory, J., Dreux, M., Munnik, T., Jaillais, Y. A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis Plant Journal 2014 77:322-337 DOI:10.1111/tpj.12358 PMID:24147788 PMCID:PMC3981938
- Jung, H. S., Crisp, P. A., Estavillo, G. M., Cole, B., Hong, F., Mockler, T. C., Pogson, B. J., Chory, J. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light Proceedings of the National Academy of Sciences of the United States of America 2013 110:14474-14479 DOI:10.1073/pnas.1311632110 PMID:23918368 PMCID:PMC3761602
- Nito, K., Wong, C. C. L., Yates, J. R., Chory, J. Tyrosine phosphorylation regulates the activity of phytochrome photoreceptors Cell Reports 2013 3:1970-1979 DOI:10.1016/j.celrep.2013.05.006 PMID:23746445 PMCID:PMC4023694
- Zhong, S. H., Liu, J. Z., Jin, H., Lin, L., Li, Q., Chen, Y., Yuan, Y. X., Wang, Z. Y., Huang, H., Qi, Y. J., Chen, X. Y., Vaucheret, H., et al. Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America 2013 110:9171-9176 DOI:10.1073/pnas.1219655110 PMID:23686579 PMCID:PMC3670308
- Guo, Y., Zheng, Z., La Clair, J. J., Chory, J., Noel, J. P. Smoke-derived karrikin perception by the α/β-hydrolase KAI2 from Arabidopsis Proceedings of the National Academy of Sciences of the United States of America 2013 110:8284-8289 DOI:10.1073/pnas.1306265110 PMID:23613584 PMCID:PMC3657771
- Chory, J., Noel, J. P. An open letter to the metabolomics community: looking forward to a future of integrative plant biology Metabolomics 2013 9:268-270 DOI:10.1007/s11306-013-0514-0
- Zheng, Z., Guo, Y., Novak, O., Dai, X., Zhao, Y., Ljung, K., Noel, J. P., Chory, J. Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1 Nature Chemical Biology 2013 9:244-246 DOI:10.1038/nchembio.1178 PMID:23377040 PMCID:PMC3948326
- Shani, E., Weinstain, R., Zhang, Y., Castillejo, C., Kaiserli, E., Chory, J., Tsien, R. Y., Estelle, M. Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root Proceedings of the National Academy of Sciences of the United States of America 2013 110:4834-4839 DOI:10.1073/pnas.1300436110 PMID:23382232 PMCID:PMC3606980
- Woodson, J. D., Perez-Ruiz, J. M., Schmitz, R. J., Ecker, J. R., Chory, J. Sigma factor-mediated plastid retrograde signals control nuclear gene expression Plant Journal 2013 73:1-13 DOI:10.1111/tpj.12011 PMID:22950756 PMCID:PMC3605210
- Inigo, S., Giraldez, A. N., Chory, J., Cerdan, P. D. Proteasome-Mediated Turnover of Arabidopsis MED25 Is Coupled to the Activation of FLOWERING LOCUS T Transcription Plant Physiology 2012 160:1662-1673 DOI:10.1104/pp.112.205500 PMID:22992513 PMCID:PMC3490578
- Woodson, J. D., Chory, J. Organelle signaling: how stressed chloroplasts communicate with the nucleus Current Biology 2012 22:R690-R692 DOI:10.1016/j.cub.2012.07.028 PMID:22974998 PMCID:PMC4854192
- Gilkerson, J., Perez-Ruiz, J. M., Chory, J., Callis, J. The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana BMC Plant Biology 2012 12 DOI:10.1186/1471-2229-12-102 PMID:22770232 PMCID:PMC3409070
- Lu, Y. J., Schornack, S., Spallek, T., Geldner, N., Chory, J., Schellmann, S., Schumacher, K., Kamoun, S., Robatzek, S. Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking Cellular Microbiology 2012 14:682-697 DOI:10.1111/j.1462-5822.2012.01751.x PMID:22233428 PMCID:PMC4854193
- Li, L., Ljung, K., Breton, G., Schmitz, R. J., Pruneda-Paz, J., Cowing-Zitron, C., Cole, B. J., Ivans, L. J., Pedmale, U. V., Jung, H. S., Ecker, J. R., Kay, S. A., et al. Linking photoreceptor excitation to changes in plant architecture Genes & Development 2012 26:785-790 DOI:10.1101/gad.187849.112 PMID:22508725 PMCID:PMC3337452
- Belkhadir, Y., Jaillais, Y., Epple, P., Balsemao-Pires, E., Dangl, J. L., Chory, J. Brassinosteroids modulate the efficiency of plant immune responses to microbe-associated molecular patterns Proceedings of the National Academy of Sciences of the United States of America 2012 109:297-302 DOI:10.1073/pnas.1112840108 PMID:22087001 PMCID:PMC3252953
- Cuyvers, S., Dornez, E., Abou Hachem, M., Svensson, B., Hothorn, M., Chory, J., Delcour, J. A., Courtin, C. M. Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase Analytical Biochemistry 2012 420:90-92 DOI:10.1016/j.ab.2011.09.005 PMID:21964501 PMCID:PMC4854199
- Vert, G., Chory, J. Crosstalk in cellular signaling: background noise or the real thing? Developmental Cell 2011 21:985-991 DOI:10.1016/j.devcel.2011.11.006 PMID:22172668 PMCID:PMC3281494
- Won, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J., Zhao, Y. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America 2011 108:18518-18523 DOI:10.1073/pnas.1108436108 PMID:22025721 PMCID:PMC3215067
- Hothorn, M., Dabi, T., Chory, J. Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4 Nature Chemical Biology 2011 7:766-768 DOI:10.1038/nchembio.667 PMID:21964459 PMCID:PMC3197759
- Keller, M. M., Jaillais, Y., Pedmale, U. V., Moreno, J. E., Chory, J., Ballare, C. L. Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades Plant Journal 2011 67:195-207 DOI:10.1111/j.1365-313X.2011.04598.x PMID:21457375 PMCID:PMC3135679
- Hothorn, M., Belkhadir, Y., Dreux, M., Dabi, T., Noel, J. P., Wilson, I. A., Chory, J. Structural basis of steroid hormone perception by the receptor kinase bri1 Nature 2011 474:467-471 DOI:10.1038/nature10153 PMID:21666665 PMCID:PMC3280218
- Balsemao-Pires, E., Jaillais, Y., Olson, B. J. S. C., Andrade, L. R., Umen, J. G., Chory, J., Sachetto-Martins, G. The Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism BMC Plant Biology 2011 11 DOI:10.1186/1471-2229-11-108 PMID:21689410 PMCID:PMC3141639
- Filichkin, S. A., Breton, G., Priest, H. D., Dharmawardhana, P., Jaiswal, P., Fox, S. E., Michael, T. P., Chory, J., Kay, S. A., Mockler, T. C. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules PLoS One 2011 6:e16907 DOI:10.1371/journal.pone.0016907 PMID:21694767 PMCID:PMC3111414
- Woodson, J. D., Perez-Ruiz, J. M., Chory, J. Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants Current Biology 2011 21:897-903 DOI:10.1016/j.cub.2011.04.004 PMID:21565502 PMCID:PMC4886857
- Jaillais, Y., Belkhadir, Y., Balsemao-Pires, E., Dangl, J. L., Chory, J. Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation Proceedings of the National Academy of Sciences of the United States of America 2011 108:8503-8507 DOI:10.1073/pnas.1103556108 PMID:21464298 PMCID:PMC3100946
- Wu, G., Wang, X., Li, X., Kamiya, Y., Otegui, M. S., Chory, J. Methylation of a phosphatase specifies dephosphorylation and degradation of activated brassinosteroid receptors Science Signaling 2011 4 DOI:10.1126/scisignal.2001258 PMID:21558554 PMCID:PMC4854194
- Cole, B., Kay, S. A., Chory, J. Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis Plant Journal 2011 65:991-1000 DOI:10.1111/j.1365-313X.2010.04476.x PMID:21288269 PMCID:PMC3076959
- Hacham, Y., Holland, N., Butterfield, C., Ubeda-Tomas, S., Bennett, M. J., Chory, J., Savaldi-Goldstein, S. Brassinosteroid perception in the epidermis controls root meristem size Development 2011 138:839-848 DOI:10.1242/dev.061804 PMID:21270053 PMCID:PMC3035089
- Skylar, A., Sung, F., Hong, F., Chory, J., Wu, X. Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2 Developmental Biology 2011 351:82-89 DOI:10.1016/j.ydbio.2010.12.019 PMID:21185286 PMCID:PMC3041830
- Jaillais, Y., Hothorn, M., Belkhadir, Y., Dabi, T., Nimchuk, Z. L., Meyerowitz, E. M., Chory, J. Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor Genes & Development 2011 25:232-237 DOI:10.1101/gad.2001911 PMID:21289069 PMCID:PMC3034898
- Chen, M., Galvao, R. M., Li, M., Burger, B., Bugea, J., Bolado, J., Chory, J. Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes Cell 2010 141:1230-1240 DOI:10.1016/j.cell.2010.05.007 PMID:20603003 PMCID:PMC2935685
- Atwell, S., Huang, Y. S., Vilhjalmsson, B. J., Willems, G., Horton, M., Li, Y., Meng, D., Platt, A., Tarone, A. M., Hu, T. T., Jiang, R., Muliyati, N. W., et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines Nature 2010 465:627-631 DOI:10.1038/nature08800 PMID:20336072 PMCID:PMC3023908
- Todesco, M., Balasubramanian, S., Hu, T. T., Traw, M. B., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, C., Lanz, C., Laitinen, R. A. E., Huang, Y., et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana Nature 2010 465:632-U129 DOI:10.1038/nature09083 PMID:20520716 PMCID:PMC3055268
- Isono, E., Katsiarimpa, A., Muller, I. K., Anzenberger, F., Stierhof, Y. D., Geldner, N., Chory, J., Schwechheimer, C. The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana Plant Cell 2010 22:1826-1837 DOI:10.1105/tpc.110.075952 PMID:20543027 PMCID:PMC2910964
- Jaillais, Y., Chory, J. Unraveling the paradoxes of plant hormone signaling integration Nature Structural & Molecular Biology 2010 17:642-645 PMID:20520656 PMCID:PMC3166629
- Chory, J. Light signal transduction: an infinite spectrum of possibilities Plant Journal 2010 61:982-991 DOI:10.1111/j.1365-313X.2009.04105.x PMID:20409272 PMCID:PMC3124631
- Skylar, A., Hong, F., Chory, J., Weigel, D., Wu, X. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings Development 2010 137:541-549 DOI:10.1242/dev.041426 PMID:20110319 PMCID:PMC2827612
- Jung, H. S., Chory, J. Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway? Plant Physiology 2010 152:453-459 DOI:10.1104/pp.109.149070 PMID:19933385 PMCID:PMC2815895
- Nishimura, N., Sarkeshik, A., Nito, K., Park, S. Y., Wang, A., Carvalho, P. C., Lee, S., Caddell, D. F., Cutler, S. R., Chory, J., Yates, J. R., Schroeder, J. I. PYR/PYL/RCAR family members are major in vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis Plant Journal 2010 61:290-299 DOI:10.1111/j.1365-313X.2009.04054.x PMID:19874541 PMCID:PMC2807913
- Ausin, I., Mockler, T. C., Chory, J., Jacobsen, S. E. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana Nature Structural & Molecular Biology 2009 16:1325-1327 DOI:10.1038/nsmb.1690 PMID:19915591 PMCID:PMC2842998
- Pinheiro, H., Samalova, M., Geldner, N., Chory, J., Martinez, A., Moore, I. Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway Journal of Cell Science 2009 122:3749-3758 DOI:10.1242/jcs.050625 PMID:19789181 PMCID:PMC2758805
- Schwartz, C., Balasubramanian, S., Warthmann, N., Michael, T. P., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, J. N., Borevitz, J. O., Chory, J., Weigel, D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana Genetics 2009 183:723-732 DOI:10.1534/genetics.109.104984 PMID:19652183 PMCID:PMC2766330
- Vert, G., Chory, J. A toggle switch in plant nitrate uptake Cell 2009 138:1064-1066 DOI:10.1016/j.cell.2009.09.005 PMID:19766561
- Adhikari, N. D., Orler, R., Chory, J., Froehlich, J. E., Larkin, R. M. Porphyrins promote the association of GENOMES UNCOUPLED 4 and a Mg-chelatase subunit with chloroplast membranes Journal of Biological Chemistry 2009 284:24783-24796 DOI:10.1074/jbc.M109.025205 PMID:19605356 PMCID:PMC2757182
- Ibanes, M., Fabregas, N., Chory, J., Cano-Delgado, A. I. Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles Proceedings of the National Academy of Sciences of the United States of America 2009 106:13630-13635 DOI:10.1073/pnas.0906416106 PMID:19666540 PMCID:PMC2717112
- Sellaro, R., Hoecker, U., Yanovsky, M., Chory, J., Casal, J. J. Synergism of red and blue light in the control of Arabidopsis gene expression and development Current Biology 2009 19:1216-1220 DOI:10.1016/j.cub.2009.05.062 PMID:19559617 PMCID:PMC2730174
- Geldner, N., Denervaud-Tendon, V., Hyman, D. L., Mayer, U., Stierhof, Y. D., Chory, J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set Plant Journal 2009 59:169-178 DOI:10.1111/j.1365-313X.2009.03851.x PMID:19309456 PMCID:PMC4854200
- De Rybel, B., Audenaert, D., Vert, G., Rozhon, W., Mayerhofer, J., Peelman, F., Coutuer, S., Denayer, T., Jansen, L., Nguyen, L., Vanhoufte, I., Beemster, G. T. S., et al. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling Chemistry & Biology 2009 16:594-604 DOI:10.1016/j.chembiol.2009.04.008 PMID:19549598 PMCID:PMC4854203
- Pan, Y., Michael, T. P., Hudson, M. E., Kay, S. A., Chory, J., Schuler, M. A. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways Plant Physiology 2009 150:858-878 DOI:10.1104/pp.108.130757 PMID:19386812 PMCID:PMC2689971
- Liljegren, S. J., Leslie, M. E., Darnielle, L., Lewis, M. W., Taylor, S. M., Luo, R., Geldner, N., Chory, J., Randazzo, P. A., Yanofsky, M. F., Ecker, J. R. Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein Development 2009 136:1909-1918 DOI:10.1242/dev.033605 PMID:19429787 PMCID:PMC2680113
- Li, L., Yu, X., Thompson, A., Guo, M., Yoshida, S., Asami, T., Chory, J., Yin, Y. Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression Plant Journal 2009 58:275-286 DOI:10.1111/j.1365-313X.2008.03778.x PMID:19170933 PMCID:PMC2814797
- Moreno, J. E., Tao, Y., Chory, J., Ballare, C. L. Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity Proceedings of the National Academy of Sciences of the United States of America 2009 106:4935-4940 DOI:10.1073/pnas.0900701106 PMID:19251652 PMCID:PMC2660767
- Balasubramanian, S., Schwartz, C., Singh, A., Warthmann, N., Kim, M. C., Maloof, J. N., Loudet, O., Trainer, G. T., Dabi, T., Borevitz, J. O., Chory, J., Weigel, D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines PLoS One 2009 4 DOI:10.1371/journal.pone.0004318 PMID:19183806 PMCID:PMC2629843
- Dhonukshe, P., Tanaka, H., Goh, T., Ebine, K., Mahonen, A. P., Prasad, K., Blilou, I., Geldner, N., Xu, J., Uemura, T., Chory, J., Ueda, T., et al. Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions Nature 2008 456:962-975 DOI:10.1038/nature07409 PMID:18953331 PMCID:PMC2692841
- Loudet, O., Michael, T. P., Burger, B. T., Le Mette, C., Mockler, T. C., Weigel, D., Chory, J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana Proceedings of the National Academy of Sciences of the United States of America 2008 105:17193-17198 DOI:10.1073/pnas.0807264105 PMID:18971337 PMCID:PMC2579400
- Savaldi-Goldstein, S., Baiga, T. J., Pojer, F., Dabi, T., Butterfield, C., Parry, G., Santner, A., Dharmasiri, N., Tao, Y., Estelle, M., Noel, J. P., Chory, J. New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery Proceedings of the National Academy of Sciences of the United States of America 2008 105:15190-15195 DOI:10.1073/pnas.0806324105 PMID:18818305 PMCID:PMC2567513
- Leung, D. W., Otomo, C., Chory, J., Rosen, M. K. Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway Proceedings of the National Academy of Sciences of the United States of America 2008 105:12797-12802 DOI:10.1073/pnas.0801232105 PMID:18728185 PMCID:PMC2525560
- Michael, T. P., Breton, G., Hazen, S. P., Priest, H., Mockler, T. C., Kay, S. A., Chory, J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth PLoS Biology 2008 6:1887-1898 DOI:10.1371/journal.pbio.0060225 PMID:18798691 PMCID:PMC2535664
- Vert, G., Walcher, C. L., Chory, J., Nemhauser, J. L. Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2 Proceedings of the National Academy of Sciences of the United States of America 2008 105:9829-9834 DOI:10.1073/pnas.0803996105 PMID:18599455 PMCID:PMC2474533
- Jones, A. M., Chory, J., Dangl, J. L., Estelle, M., Jacobsen, S. E., Meyerowitz, E. M., Nordborg, M., Weigel, D. The impact of Arabidopsis on human health: diversifying our portfolio Cell 2008 133:939-943 DOI:10.1016/j.cell.2008.05.040 PMID:18555767 PMCID:PMC3124625
- Yu, X., Li, L., Li, L., Guo, M., Chory, J., Yin, Y. Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America 2008 105:7618-7623 DOI:10.1073/pnas.0802254105 PMID:18467490 PMCID:PMC2396691
- Woodson, J. D., Chory, J. Coordination of gene expression between organellar and nuclear genomes Nature Reviews Genetics 2008 9:383-395 DOI:10.1038/nrg2348 PMID:18368053 PMCID:PMC4854206
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- Willows, R. D., Mayer, S. M., Foulk, M. S., DeLong, A., Hanson, K., Chory, J., Beale, S. I. Phytobilin biosynthesis: the Synechocystis sp PCC 6803 heme oxygenase-encoding ho1 gene complements a phytochrome-deficient Arabidopsis thaliana hy1 mutant Plant Molecular Biology 2000 43:113-120 DOI:10.1023/a:1006489129449 PMID:10949378
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- Christensen, S. K., Dagenais, N., Chory, J., Weigel, D. Regulation of auxin response by the protein kinase PINOID Cell 2000 100:469-478 DOI:10.1016/s0092-8674(00)80682-0 PMID:10693763
- Schumacher, K., Chory, J. Brassinosteroid signal transduction: still casting the actors Current Opinion in Plant Biology 2000 3:79-84 DOI:10.1016/s1369-5266(99)00038-2 PMID:10679450
- Neff, M. M., Fankhauser, C., Chory, J. Light: an indicator of time and place Genes & Development 2000 14:257-271 PMID:10673498
- Neff, M. M., Nguyen, S. M., Malancharuvil, E. J., Fujioka, S., Noguchi, T., Seto, H., Tsubuki, M., Honda, T., Takatsuto, S., Yoshida, S., Chory, J. BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America 1999 96:15316-15323 DOI:10.1073/pnas.96.26.15316 PMID:10611382 PMCID:PMC24817
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- Kardailsky, I., Shukla, V. K., Ahn, J. H., Dagenais, N., Christensen, S. K., Nguyen, J. T., Chory, J., Harrison, M. J., Weigel, D. Activation tagging of the floral inducer FT Science 1999 286:1962-1965 DOI:10.1126/science.286.5446.1962 PMID:10583961
- Estelle, M., Chory, J. Signals and pathways: keeping track of what's going on - Editorial overview Current Opinion in Plant Biology 1999 2:349-351 DOI:10.1016/s1369-5266(99)00003-5
- Streatfield, S. J., Weber, A., Kinsman, E. A., Hausler, R. E., Li, J., Post-Beittenmiller, D., Kaiser, W. M., Pyke, K. A., Flugge, U. I., Chory, J. The phosphoenolpyruvate/phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression Plant Cell 1999 11:1609-1621 DOI:10.1105/tpc.11.9.1609 PMID:10488230 PMCID:PMC144315
- Noguchi, T., Fujioka, S., Takatsuto, S., Sakurai, A., Yoshida, S., Li, J. M., Chory, J. Arabidopsis det2 is defective in the conversion of (24R)-24-methylcholest-4-En-3-One to (24R)-24-methyl-5 alpha-cholestan-3-one in brassinosteroid biosynthesis Plant Physiology 1999 120:833-839 DOI:10.1104/pp.120.3.833
- Fankhauser, C., Yeh, K. C., Lagarias, J. C., Zhang, H., Elich, T. D., Chory, J. PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis Science 1999 284:1539-1541 DOI:10.1126/science.284.5419.1539 PMID:10348744
- Li, J., Chory, J. Brassinosteroid actions in plants Journal of Experimental Botany 1999 50:275-282 DOI:10.1093/jexbot/50.332.275
- Fankhauser, C., Chory, J. Photomorphogenesis: Light receptor kinases in plants! Current Biology 1999 9:R123-R126 DOI:10.1016/s0960-9822(99)80078-5
- Lopez-Juez, E., Jarvis, R. P., Takeuchi, A., Page, A. M., Chory, J. New Arabidopsis cue mutants suggest a close connection between plastid- and phytochrome regulation of nuclear gene expression Plant Physiology 1998 118:803-815 DOI:10.1104/pp.118.3.803 PMID:9808724 PMCID:PMC34790
- Jarvis, P., Chen, L. J., Li, H., Pete, C. A., Fankhauser, C., Chory, J. An Arabidopsis mutant defective in the plastid general protein import apparatus Science 1998 282:100-103 DOI:10.1126/science.282.5386.100 PMID:9756470
- Neff, M. M., Chory, J. Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development Plant Physiology 1998 118:27-36 DOI:10.1104/pp.118.1.27 PMID:9733523 PMCID:PMC34865
- Neff, M. M., Neff, J. D., Chory, J., Pepper, A. E. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics Plant Journal 1998 14:387-392 DOI:10.1046/j.1365-313X.1998.00124.x PMID:9628033
- Reed, J. W., Elumalai, R. P., Chory, J. Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation Genetics 1998 148:1295-1310 PMID:9539443 PMCID:PMC1460030
- Elich, T. D., Chory, J. Phytochrome: if it looks and smells like a histidine kinase, is it a histidine kinase? Cell 1997 91:713-716 DOI:10.1016/s0092-8674(00)80458-4 PMID:9413979
- Elich, T. D., Chory, J. Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins Plant Cell 1997 9:2271-2280 DOI:10.1105/tpc.9.12.2271 PMID:9437866 PMCID:PMC157073
- Hamazato, F., Shinomura, T., Hanzawa, H., Chory, J., Furuya, M. Fluence and wavelength requirements for arabidopsis CAB gene induction by different phytochromes Plant Physiology 1997 115:1533-1540 DOI:10.1104/pp.115.4.1533 PMID:9414562 PMCID:PMC158619
- Fujioka, S., Li, J., Choi, Y. H., Seto, H., Takatsuto, S., Noguchi, T., Watanabe, T., Kuriyama, H., Yokota, T., Chory, J., Sakurai, A. The Arabidopsis deetiolated2 mutant is blocked early in Brassinosteroid biosynthesis Plant Cell 1997 9:1951-1962 DOI:10.1105/tpc.9.11.1951 PMID:9401120 PMCID:PMC157049
- Anderson, S. L., Somers, D. E., Millar, A. J., Hanson, K., Chory, J., Kay, S. A. Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock Plant Cell 1997 9:1727-1743 DOI:10.1105/tpc.9.10.1727 PMID:9368413 PMCID:PMC157017
- Li, J., Chory, J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction Cell 1997 90:929-938 DOI:10.1016/s0092-8674(00)80357-8 PMID:9298904
- Chory, J. Light modulation of vegetative development Plant Cell 1997 9:1225-1234 DOI:10.1105/tpc.9.7.1225 PMID:9254936 PMCID:PMC156993
- Chory, J., Li, J. Gibberellins, brassinosteroids and light-regulated development Plant Cell and Environment 1997 20:801-806 DOI:10.1046/j.1365-3040.1997.d01-99.x
- Li, J., Biswas, M. G., Chao, A., Russell, D. W., Chory, J. Conservation of function between mammalian and plant steroid 5α-reductases Proceedings of the National Academy of Sciences of the United States of America 1997 94:3554-3559 DOI:10.1073/pnas.94.8.3554 PMID:9108014 PMCID:PMC20477
- Pepper, A. E., Chory, J. Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-Response regulatory pathways Genetics 1997 145:1125-1137 PMID:9093863 PMCID:PMC1207881
- Mulligan, R. M., Chory, J., Ecker, J. R. Signaling in plants Proceedings of the National Academy of Sciences of the United States of America 1997 94:2793-2795 DOI:10.1073/pnas.94.7.2793
- Fankhauser, C., Chory, J. Light control of plant development Annual Review of Cell and Developmental Biology 1997 13:203-229 DOI:10.1146/annurev.cellbio.13.1.203
- Surpin, M., Chory, J. The co-ordination of nuclear and organellar genome expression in eukaryotic cells Essays in Biochemistry 1997 32:113-125 PMID:9493015
- Mochizuki, N., Susek, R., Chory, J. An intracellular signal transduction pathway between the chloroplast and nucleus is involved in de-etiolation Plant Physiology 1996 112:1465-1469 DOI:10.1104/pp.112.4.1465 PMID:8972595 PMCID:PMC158078
- Fujioka, S., Choi, Y. H., Takatsuto, S., Yokota, T., Li, J., Chory, J., Sakurai, A. Identification of castasterone, 6-deoxocastasterone, typhasterol and 6-deoxotyphasterol from the shoots of Arabidopsis thaliana Plant and Cell Physiology 1996 37:1201-1203 PMID:9032971
- Meehan, L., Harkins, K., Chory, J., Rodermel, S. Lhcb transcription is coordinated with cell size and chlorophyll accumulation - Studies on fluorescence-activated, cell-sorter-purified single cells from wild-type and immutans Arabidopsis thaliana Plant Physiology 1996 112:953-963 PMID:12226428 PMCID:PMC158022
- Chory, J., Catterjee, M., Cook, R. K., Elich, T., Fankhauser, C., Li, J., Nagpal, P., Neff, M., Pepper, A., Poole, D., Reed, J., Vitart, V. From seed germination to flowering, light controls plant development via the pigment phytochrome Proceedings of the National Academy of Sciences of the United States of America 1996 93:12066-12071 DOI:10.1073/pnas.93.22.12066 PMID:8901532 PMCID:PMC37942
- Reed, J. W., Foster, K. R., Morgan, P. W., Chory, J. Phytochrome B affects responsiveness to gibberellins in Arabidopsis Plant Physiology 1996 112:337-342 DOI:10.1104/pp.112.1.337 PMID:8819329 PMCID:PMC157954
- Li, J., Nagpal, P., Vitart, V., McMorris, T. C., Chory, J. A role for brassinosteroids in light-dependent development of Arabidopsis Science 1996 272:398-401 DOI:10.1126/science.272.5260.398 PMID:8602526
- Chory, J., Cook, R. K., Dixon, R., Elich, T., Li, H. M., Lopez, E., Mochizuki, N., Nagpal, P., Pepper, A., Poole, D., Reed, J. Signal-transduction pathways controlling light-regulated development in Arabidopsis Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 1995 350:59-65 DOI:10.1098/rstb.1995.0138 PMID:8577851
- Li, H., Culligan, K., Dixon, R. A., Chory, J. CUE1: A Mesophyll cell-specific positive regulator of light-controlled gene expression in Arabidopsis Plant Cell 1995 7:1599-1610 DOI:10.1105/tpc.7.10.1599 PMID:12242356 PMCID:PMC161018
- Chory, J. Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A Scientist 1995 9:15-15 PMID:12231818 PMCID:PMC158772
- Millar, A. J., Straume, M., Chory, J., Chua, N. H., Kay, S. A. The regulation of circadian period by phototransduction pathways in Arabidopsis Science 1995 267:1163-1166 DOI:10.1126/science.7855596 PMID:7855596
- Chory, J., Li, H. M., Mochizuki, N. Molecular methods for isolation of signal transduction pathway mutants Methods in Cell Biology 1995 49:441-454 DOI:10.1016/s0091-679x(08)61472-7 PMID:8531775
- Elich, T. D., Chory, J. Initial events in phytochrome signalling: still in the dark Plant Molecular Biology 1994 26:1315-1327 PMID:7858193
- Chory, J. Plant phototransduction. Phytochrome signal transduction Current Biology 1994 4:844-846 DOI:10.1016/s0960-9822(00)00189-5 PMID:7820558
- Pepper, A., Delaney, T., Washburn, T., Poole, D., Chory, J. DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein Cell 1994 78:109-116 DOI:10.1016/0092-8674(94)90577-0 PMID:8033202
- Reed, J. W., Nagatani, A., Elich, T. D., Fagan, M., Chory, J. Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development Plant Physiology 1994 104:1139-1149 PMID:12232154 PMCID:PMC159274
- Quail, P. H., Briggs, W. R., Chory, J., Hangarter, R. P., Harberd, N. P., Kendrick, R. E., Koornneef, M., Parks, B., Sharrock, R. A., Schafer, E., Thompson, W. F., Whitelam, G. C. Spotlight on phytochrome nomenclature Plant Cell 1994 6:468-471 DOI:10.1105/tpc.6.4.468 PMID:12244245 PMCID:PMC160449
- Chory, J., Reinecke, D., Sim, S., Washburn, T., Brenner, M. A role for cytokinins in de-etiolation in Arabidopsis (det mutants have an altered response to cytokinins) Plant Physiology 1994 104:339-347 PMID:12232085 PMCID:PMC159204
- Li, H. M., Altschmied, L., Chory, J. Arabidopsis mutants define downstream branches in the phototransduction pathway Genes & Development 1994 8:339-349 DOI:10.1101/gad.8.3.339 PMID:8314087
- Shinomura, T., Nagatani, A., Chory, J., Furuya, M. The Induction of Seed Germination in Arabidopsis thaliana is regulated principally by phytochrome B and secondarily by phytochrome A Plant Physiology 1994 104:363-371 PMID:12232088 PMCID:PMC159207
- Poch, H. L. C., Peto, C. A., Chory, J. A mutation in the Arabidopsis DET3 gene uncouples photoregulated leaf development from gene expression and chloroplast biogenesis Plant Journal 1993 4:671-682
- Susek, R. E., Ausubel, F. M., Chory, J. Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development Cell 1993 74:787-799 DOI:10.1016/0092-8674(93)90459-4 PMID:7690685
- Li, H. M., Washburn, T., Chory, J. Regulation of gene expression by light Current Opinion in Cell Biology 1993 5:455-460 DOI:10.1016/0955-0674(93)90011-e PMID:8352963
- Nagatani, A., Reed, J. W., Chory, J. Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A Plant Physiology 1993 102:269-277 PMID:12231818 PMCID:PMC158772
- Chory, J. Out of darkness: mutants reveal pathways controlling light-regulated development in plants Trends in Genetics 1993 9:167-172 DOI:10.1016/0168-9525(93)90163-c PMID:8337753
- Reed, J. W., Nagpal, P., Poole, D. S., Furuya, M., Chory, J. Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development Plant Cell 1993 5:147-157 DOI:10.1105/tpc.5.2.147 PMID:8453299 PMCID:PMC160258
- Reed, J. W., Nagpal, P., Chory, J. Searching for phytochrome mutants Photochemistry and Photobiology 1992 56:833-838 DOI:10.1111/j.1751-1097.1992.tb02240.x
- Chory, J. A genetic model for light-regulated seedling Arabidopsis Development 1992 115:337-354
- Susek, R. E., Chory, J. A tale of 2 genomes - role of a chloroplast signal in coordinating nuclear and plastid genome expression Australian Journal of Plant Physiology 1992 19:387-399
- Chory, J. Light signals in leaf and chloroplast development: photoreceptors and downstream responses in search of a transduction pathway New Biologist 1991 3:538-548 PMID:1911646
- Chory, J., Nagpal, P., Peto, C. A. Phenotypic and genetic analysis of det2, a new mutant that affects light-regulated seedling development in Arabidopsis Plant Cell 1991 3:445-459 DOI:10.1105/tpc.3.5.445 PMID:12324600 PMCID:PMC160013
- Nagatani, A., Chory, J., Furuya, M. Phytochrome B is not detectable in the hy3 mutant of Arabidopsis, which is deficient in responding to end-of-day far-red light treatments Plant and Cell Physiology 1991 32:1119-1122
- Chory, J., Aguilar, N., Peto, C. A. The phenotype of Arabidopsis thaliana det1 mutants suggests a role for cytokinins in greening Symposia of the Society for Experimental Biology 1991 45:21-29 PMID:1843409
- Chory, J., Peto, C. A. Mutations in the DET1 gene affect cell-type-specific expression of light-regulated genes and chloroplast development in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America 1990 87:8776-8780 DOI:10.1073/pnas.87.22.8776 PMID:2247447 PMCID:PMC55042
- Ohl, S., Hedrick, S. A., Chory, J., Lamb, C. J. Functional properties of a phenylalanine ammonia-lyase promoter from Arabidopsis Plant Cell 1990 2:837-848 DOI:10.1105/tpc.2.9.837 PMID:2152131 PMCID:PMC159934
- Chory, J., Peto, C., Feinbaum, R., Pratt, L., Ausubel, F. Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light Cell 1989 58:991-999 DOI:10.1016/0092-8674(89)90950-1 PMID:2776216
- Chory, J., Peto, C. A., Ashbaugh, M., Saganich, R., Pratt, L., Ausubel, F. Different roles for phytochrome in etiolated and green plants deduced from characterization of Arabidopsis thaliana mutants Plant Cell 1989 1:867-880 DOI:10.1105/tpc.1.9.867 PMID:12359912 PMCID:PMC159823
- Chory, J., Voytas, D. F., Olszewski, N. E., Ausubel, F. M. Gibberellin-induced changes in the populations of translatable mRNAs and accumulated polypeptides in dwarfs of maize and pea Plant Physiology 1987 83:15-23 DOI:10.1104/pp.83.1.15 PMID:16665192 PMCID:PMC1056291
- Hoger, J. H., Chory, J., Kaplan, S. In vitro biosynthesis and membrane association of photosynthetic reaction center subunits from Rhodopseudomonas sphaeroides Journal of Bacteriology 1986 165:942-950 PMID:3512531 PMCID:PMC214520
- Chory, J., Muller, E. D., Kaplan, S. DNA-directed in vitro synthesis and assembly of the form II D-ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodopseudomonas sphaeroides Journal of Bacteriology 1985 161:307-313 PMID:3918003 PMCID:PMC214872
- Muller, E. D., Chory, J., Kaplan, S. Cloning and characterization of the gene product of the form II ribulose-1,5-bisphosphate carboxylase gene of Rhodopseudomonas sphaeroides Journal of Bacteriology 1985 161:469-472 PMID:3881398 PMCID:PMC214901
- Donohue, T. J., Chory, J., Goldsand, T. E., Lynn, S. P., Kaplan, S. Structure and physical map of Rhodopseudomonas sphaeroides bacteriophage RS1 DNA Journal of Virology 1985 55:147-157 PMID:2989552 PMCID:PMC254909
- Chory, J., Donohue, T. J., Varga, A. R., Staehelin, L. A., Kaplan, S. Induction of the photosynthetic membranes of Rhodopseudomonas sphaeroides: biochemical and morphological studies Journal of Bacteriology 1984 159:540-554 PMID:6611335 PMCID:PMC215678
- Chory, J., Kaplan, S. Light-dependent regulation of the synthesis of soluble and intracytoplasmic membrane proteins of Rhodopseudomonas sphaeroides Journal of Bacteriology 1983 153:465-474 PMID:6600232 PMCID:PMC217395
- Chory, J., Kaplan, S. The in vitro transcription-translation of DNA and RNA templates by extracts of Rhodopseudomonas sphaeroides. Optimization and comparison of template specificity with Escherichia coli extracts and in vivo synthesis Journal of Biological Chemistry 1982 257:5110-5121 PMID:6184370
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chapter
- Nott, A., Jung, H. S., Koussevitzky, S., Chory, J. Plastid-to-nucleus retrograde signaling Annual Review of Plant Biology. 739-759. 2006 DOI:10.1146/annurev.arplant.57.032905.105310
- Vert, G., Nemhauser, J. L., Geldner, N., Hong, F., Chory, J. Molecular mechanisms of steroid hormone signaling in plants Annual Review of Cell and Developmental Biology. 177-201. 2005 DOI:10.1146/annurev.cellbio.21.090704.151241
- Chory, J., Elich, T., Li, H. M., Pepper, A., Poole, D., Reed, J., Susek, R., Vitart, V., Washburn, T., Furuya, M., Nagatani, A. Genes controlling Arabidopsis photomorphogenesis Molecular Botany: Signals and the Environment. 257-263. 1994