academic article

• Nogal, B., McCoy, L. E., van Gils, M. J., Cottrell, C. A., Voss, J. E., Andrabi, R., Pauthner, M., Liang, C. H., Messmer, T., Nedellec, R., Shin, M., Turner, H. L., et al. HIV envelope trimer-elicited autologous neutralizing antibodies bind a region overlapping the N332 glycan supersite Science Advances  2020 6  DOI:10.1126/sciadv.aba0512  PMID:32548265  PMCID:PMC7274786
• Yang, Y. H. R., McCoy, L. E., van Gils, M. J., Andrabi, R., Turner, H. L., Yuan, M., Cottrell, C. A., Ozorowski, G., Voss, J., Pauthner, M., Polveroni, T. M., Messmer, T., et al. Autologous antibody responses to an HIV envelope glycan hole are not easily broadened in rabbits Journal of Virology  2020 94  DOI:10.1128/jvi.01861-19  PMID:31941772  PMCID:PMC7081899
• Pedreno-Lopez, N., Dang, C. M., Rosen, B. C., Ricciardi, M. J., Bailey, V. K., Gutman, M. J., Gonzalez-Nieto, L., Pauthner, M. G., Le, K., Song, G., Andrabi, R., Weisgrau, K. L., et al. Induction of transient virus replication facilitates antigen-independent isolation of SIV-specific monoclonal antibodies Molecular Therapy-Methods & Clinical Development  2020 16:225-237  DOI:10.1016/j.omtm.2020.01.010  PMID:32083148  PMCID:PMC7021589
• Pedreno-Lopez, N., Ricciardi, M. J., Rosen, B. C., Song, G., Andrabi, R., Burton, D. R., Rakasz, E. G., Watkins, D. I. An Automated Fluorescence-Based Method to Isolate Bone Marrow-Derived Plasma Cells from Rhesus Macaques Using SIVmac239 SOSIP.664 Molecular Therapy-Methods & Clinical Development  2020 18:781-790  DOI:10.1016/j.omtm.2020.08.004  PMID:32953929  PMCID:PMC7476808
• Rogers, T. F., Zhao, F., Huang, D. L., Beutler, N., Burns, A., He, W. T., Limbo, O., Smith, C., Song, G., Woehl, J., Yang, L. L., Abbott, R. K., et al. Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model Science  2020 369:956-963  DOI:10.1126/science.abc7520  PMID:32540903  PMCID:PMC7299280
• von Bredow, B., Andrabi, R., Grunst, M., Grandea, A. G., Le, K., Song, G., Berndsen, Z. T., Porter, K., Pallesen, J., Ward, A. B., Burton, D. R., Evans, D. T. Differences in the binding affinity of an HIV-1 V2 apex-specific antibody for the SIVsmm/mac envelope glycoprotein uncouple antibody-dependent cellular cytotoxicity from neutralization Mbio  2019 10:e01255-19  DOI:10.1128/mBio.01255-19  PMID:31266872  PMCID:PMC6606807
• Andrabi, R., Pallesen, J., Allen, J. D., Song, G., Zhang, J., de Val, N., Gegg, G., Porter, K., Su, C., Pauthner, M., Newman, A., Bouton-Verville, H., et al. The chimpanzee SIV envelope trimer: structure and deployment as an HIV vaccine template Cell Reports  2019 27:2426-2441  DOI:10.1016/j.celrep.2019.04.082  PMID:31116986  PMCID:PMC6533203
• Voss, J. E., Gonzalez-Martin, A., Andrabi, R., Fuller, R. P., Murrell, B., McCoy, L. E., Porter, K., Huang, D., Li, W., Sok, D., Le, K., Briney, B., et al. Reprogramming the antigen specificity of B cells using genome-editing technologies Elife  2019 8  DOI:10.7554/eLife.42995  PMID:30648968  PMCID:PMC6355199
• Cao, L. W., Pauthner, M., Andrabi, R., Rantalainen, K., Berndsen, Z., Diedrich, J. K., Menis, S., Sok, D., Bastidas, R., Park, S. K. R., Delahunty, C. M., He, L., et al. Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer Nature Communications  2018 9  DOI:10.1038/s41467-018-06121-4  PMID:30209313  PMCID:PMC6135743
• Andrabi, R., Bhiman, J. N., Burton, D. R. Strategies for a multi-stage neutralizing antibody-based HIV vaccine Current Opinion in Immunology  2018 53:143-151  DOI:10.1016/j.coi.2018.04.025  PMID:29775847  PMCID:PMC6141341
• Voss, J. E., Andrabi, R., McCoy, L. E., de Val, N., Fuller, R. P., Messmer, T., Su, C. Y., Sok, D., Khan, S. N., Garces, F., Pritchard, L. K., Wyatt, R. T., et al. Elicitation of neutralizing antibodies targeting the V2 apex of the HIV Envelope trimer in a wild-type animal model Cell Reports  2017 21:222-235  DOI:10.1016/j.celrep.2017.09.024  PMID:28978475  PMCID:PMC5640805
• Lee, J. H., Andrabi, R., Su, C. Y., Yasmeen, A., Julien, J. P., Kong, L., Wu, N. C., McBride, R., Sok, D., Pauthner, M., Cottrell, C. A., Nieusma, T., et al. A broadly neutralizing antibody targets the dynamic HIV envelope trimer apex via a long, rigidified, and anionic β-hairpin structure Immunity  2017 46:690-702  DOI:10.1016/j.immuni.2017.03.017  PMID:28423342  PMCID:PMC5400778
• Cao, L., Diedrich, J. K., Kulp, D. W., Pauthner, M., He, L., Park, S. K. R., Sok, D., Su, C. Y., Delahunty, C. M., Menis, S., Andrabi, R., Guenaga, J., et al. Global site-specific N-glycosylation analysis of HIV envelope glycoprotein Nature Communications  2017 8  DOI:10.1038/ncomms14954  PMID:28348411
• Andrabi, R., Su, C. Y., Liang, C. H., Shivatare, S. S., Briney, B., Voss, J. E., Nawazi, S. K., Wu, C. Y., Wong, C. H., Burton, D. R. Glycans function as anchors for antibodies and help drive HIV broadly neutralizing antibody development Immunity  2017 47:524-537  DOI:10.1016/j.immuni.2017.08.006  PMID:28916265  PMCID:PMC5613947
• Voss, J. E., Macauley, M. S., Rogers, K. A., Villinger, F., Duan, L., Shang, L., Fink, E. A., Andrabi, R., Colantonio, A. D., Robinson, J. E., Johnson, R. P., Burton, D. R., et al. Reproducing SIVΔnef vaccine correlates of protection: trimeric gp41 antibody concentrated at mucosal front lines AIDS  2016 30:2427-2438  DOI:10.1097/qad.0000000000001199  PMID:27428745  PMCID:PMC5069161
• Andrabi, R., Voss, J. E., Liang, C. H., Briney, B., McCoy, L. E., Wu, C. Y., Wong, C. H., Poignard, P., Burton, D. R. Identification of common features in prototype broadly neutralizing antibodies to HIV envelope V2 apex to facilitate vaccine design Immunity  2015 43:959-973  DOI:10.1016/j.immuni.2015.10.014  PMID:26588781  PMCID:PMC4654981
• Khan, L., Makhdoomi, M. A., Kumar, S., Nair, A., Andrabi, R., Clark, B. E., Auyeung, K., Bhattacharya, J., Vajpayee, M., Wig, N., Pantophlet, R., Luthra, K. Identification of CD4-binding site dependent plasma neutralizing antibodies in an HIV-1 Infected Indian individual PLoS One  2015 10  DOI:10.1371/journal.pone.0125575  PMID:25962059  PMCID:PMC4427266
• Andrabi, R., Makhdoomi, M. A., Kumar, R., Bala, M., Parray, H., Gupta, A., Kotnala, A., Thirumurthy, V., Luthra, K. Highly efficient neutralization by plasma antibodies from human immunodeficiency virus type-1 infected individuals on antiretroviral drug therapy Journal of Clinical Immunology  2014 34:504-513  DOI:10.1007/s10875-014-0010-y  PMID:24682667
• Singh, A., Palanichamy, J. K., Ramalingam, P., Kassab, M. A., Bhagat, M., Andrabi, R., Luthra, K., Sinha, S., Chattopadhyay, P. Long-term suppression of HIV-1C virus production in human peripheral blood mononuclear cells by LTR heterochromatization with a short double-stranded RNA Journal of Antimicrobial Chemotherapy  2014 69:404-415  DOI:10.1093/jac/dkt348  PMID:24022068
• Almagro, J. C., Gilliland, G. L., Breden, F., Scott, J. K., Sok, D., Pauthner, M., Reichert, J. M., Helguera, G., Andrabi, R., Mabry, R., Blery, M., Voss, J. E., et al. Antibody engineering and therapeutics, The Annual Meeting of the Antibody Society: December 8-12, 2013, Huntington Beach, CA MAbs  2014 6:577-618  DOI:10.4161/mabs.28421  PMID:24589717  PMCID:PMC4011904
• Andrabi, R., Williams, C., Wang, X. H., Li, L., Choudhary, A. K., Wig, N., Biswas, A., Luthra, K., Nadas, A., Seaman, M. S., Nyambi, P., Zolla-Pazner, S., et al. Cross-neutralizing activity of human anti-V3 monoclonal antibodies derived from non-B clade HIV-1 infected individuals Virology  2013 439:81-88  DOI:10.1016/j.virol.2012.12.010  PMID:23466102  PMCID:PMC3756680
• Kumar, R., Andrabi, R., Tiwari, A., Prakash, S. S., Wig, N., Dutta, D., Sankhyan, A., Khan, L., Sinha, S., Luthra, K. A novel strategy for efficient production of anti-V3 human scFvs against HIV-1 clade C BMC Biotechnology  2012 12  DOI:10.1186/1472-6750-12-87  PMID:23153214  PMCID:PMC3536577
• Andrabi, R., Kumar, R., Bala, M., Nair, A., Prakash, S. S., Kushwaha, V., Luthra, K. Envelope diversity, characteristics of V3 region and predicted co-receptor usage of human immunodeficiency viruses infecting north Indians Journal of Microbiology  2012 50:869-873  DOI:10.1007/s12275-012-2136-z  PMID:23124759
• Andrabi, R., Kumar, R., Bala, M., Nair, A., Biswas, A., Wig, N., Kumar, P., Pal, R., Sinha, S., Luthra, K. Production and characterization of human anti-V3 monoclonal antibodies from the cells of HIV-1 infected Indian donors Virology Journal  2012 9  DOI:10.1186/1743-422x-9-196  PMID:22971578  PMCID:PMC3493341
• Prakash, S. S., Andrabi, R., Kumar, R., Lodha, R., Kabra, S. K., Vajpayee, M., Luthra, K. Antibodies that cross-neutralize the tier-2 pseudoviruses are produced in antiretroviral-naive HIV-1-infected children from northern India Archives of Virology  2012 157:1797-1801  DOI:10.1007/s00705-012-1357-0  PMID:22674340
• Andrabi, R., Bala, M., Kumar, R., Wig, N., Hazarika, A., Luthra, K. Neutralization of tier-2 viruses and epitope profiling of plasma antibodies from human immunodeficiency virus type 1 infected donors from India PLoS One  2012 7  DOI:10.1371/journal.pone.0043704  PMID:22952740  PMCID:PMC3432049
• Choudhary, A. K., Andrabi, R., Prakash, S. S., Kumar, R., Choudhury, S. D., Wig, N., Biswas, A., Hazarika, A., Luthra, K. Neutralization potential of the plasma of HIV-1 infected Indian patients in the context of Anti-V3 antibody content and antiretroviral theraphy Journal of Microbiology  2012 50:149-154  DOI:10.1007/s12275-012-1246-y  PMID:22367950
• Prakash, S. S., Andrabi, R., Kumar, R., Kabra, S. K., Lodha, R., Vajpayee, M., Luthra, K. Binding antibody responses to the immunogenic regions of viral envelope in HIV-1-infected Indian children Viral Immunology  2011 24:463-469  DOI:10.1089/vim.2011.0039  PMID:22149971  PMCID:PMC3234704
• Andrabi, R., Choudhary, A. K., Bala, M., Kalra, R., Prakash, S. S., Pandey, R. M., Luthra, K. Relative reactivity of HIV-1 polyclonal plasma antibodies directed to V3 and MPER regions suggests immunodominance of V3 over MPER and dependence of high anti-V3 antibody titers on virus persistence Archives of Virology  2011 156:1787-1794  DOI:10.1007/s00705-011-1053-5  PMID:21735212
• Choudhury, S. D., Chaudhury, A. K., Kalra, R., Andrabi, R., Wig, N., Biswas, A., Bala, M., Luthra, K. Antiretroviral drug resistance mutations in the reverse transcriptase gene of HIV-1 isolates from Northern Indian patients: a follow-up study Archives of Virology  2010 155:563-569  DOI:10.1007/s00705-010-0605-4  PMID:20180140
• Rehman, S., Shawl, A. S., Kour, A., Andrabi, R., Sudan, P., Sultan, P., Verma, V., Qazi, G. N. An endophytic Neurospora sp. from Nothapodytes foetida producing camptothecin Applied Biochemistry and Microbiology  2008 44:203-209  DOI:10.1134/s0003683808020130  PMID:18669267