academic article

• Wang, Q., Matsui, T., Domitrovic, T., Zheng, Y. L., Doerschuk, P. C., Johnson, J. E.  Dynamics in cryo em reconstructions visualized with maximum-likelihood derived variance maps  Journal of Structural Biology  2013 181:195-206  DOI:10.1016/j.jsb.2012.11.005  PMID:23246781
• Hendrix, R. W., Johnson, J. E.  Bacteriophage hk97 capsid assembly and maturation  Advances in Experimental Medicine and Biology  2012 726:351-363  DOI:10.1007/978-1-4614-0980-9_15  PMID:22297521
• Lander, G. C., Baudoux, A. C., Azam, F., Potter, C. S., Carragher, B., Johnson, J. E.  Capsomer dynamics and stabilization in the t=12 marine bacteriophage sio-2 and its procapsid studied by cryoem  Structure  2012 20:498-503  DOI:10.1016/j.str.2012.01.007
• Domitrovic, T., Matsui, T., Johnson, J. E.  Dissecting quasi-equivalence in nonenveloped viruses: Membrane disruption is promoted by lytic peptides released from subunit pentamers, not hexamers  Journal of Virology  2012 86:9976-9982  DOI:10.1128/jvi.01089-12
• Baudoux, A. C., Hendrix, R. W., Lander, G. C., Bailly, X., Podell, S., Paillard, C., Johnson, J. E., Potter, C. S., Carragher, B., Azam, F.  Genomic and functional analysis of vibrio phage sio-2 reveals novel insights into ecology and evolution of marine siphoviruses  Environmental Microbiology  2012 14:2071-2086  DOI:10.1111/j.1462-2920.2011.02685.x  PMID:22225728
• Naji, S., Ambrus, G., Cimermancic, P., Reyes, J. R., Johnson, J. R., Filbrandt, R., Huber, M. D., Vesely, P., Krogan, N. J., Yates, J. R., Saphire, A. C., Gerace, L.  Host cell interactome of hiv-1 rev includes rna helicases involved in multiple facets of virus production  Molecular & Cellular Proteomics  2012 11:M111.015313  DOI:10.1074/mcp.M111.015313  PMID:22174317
• Routh, A., Domitrovic, T., Johnson, J. E.  Host rnas, including transposons, are encapsidated by a eukaryotic single-stranded rna virus  Proceedings of the National Academy of Sciences of the United States of America  2012 109:1907-1912  DOI:10.1073/pnas.1116168109
• Asselbergs, F. W., Guo, Y. R., van Iperen, E. P. A., Sivapalaratnam, S., Tragante, V., Lanktree, M. B., Lange, L. A., Almoguera, B., Appelman, Y. E., Barnard, J., Baumert, J., Beitelshees, A. L., et al.  Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci  American Journal of Human Genetics  2012 91:823-838  DOI:10.1016/j.ajhg.2012.08.032  PMID:23063622
• Veesler, D., Quispe, J., Grigorieff, N., Potter, C. S., Carragher, B., Johnson, J. E.  Maturation in action: Cryoem study of a viral capsid caught during expansion  Structure  2012 20:1384-1390  DOI:10.1016/j.str.2012.05.011
• Roos, W. H., Gertsman, I., May, E. R., Brooks, C. L., Johnson, J. E., Wuite, G. J. L.  Mechanics of bacteriophage maturation  Proceedings of the National Academy of Sciences of the United States of America  2012 109:2342-2347  DOI:10.1073/pnas.1109590109  PMID:22308333
• Speir, J. A., Johnson, J. E.  Nucleic acid packaging in viruses  Current Opinion in Structural Biology  2012 22:65-71  DOI:10.1016/j.sbi.2011.11.002
• Thomson, T. C., Schneemann, A., Johnson, J.  Oocyte destruction is activated during viral infection  Genesis  2012 50:453-465  DOI:10.1002/dvg.22004  PMID:22173880
• Fu, C. Y., Johnson, J. E.  Structure and cell biology of archaeal virus stiv  Current Opinion in Virology  2012 2:122-127  DOI:10.1016/j.coviro.2012.01.007
• Johnson, J. L., Monfregola, J., Napolitano, G., Kiosses, W. B., Catz, S. D.  Vesicular trafficking through cortical actin during exocytosis is regulated by the rab27a effector jfc1/slp1 and the rhoa-gtpase-activating protein gem-interacting protein  Molecular Biology of the Cell  2012 23:1902-1916  DOI:10.1091/mbc.E11-12-1001  PMID:22438581
• Veesler, D., Johnson, J. E.  Virus maturation  Annual Review of Biophysics  2012 41:473-496  DOI:10.1146/annurev-biophys-042910-155407  PMID:22404678
• Johnson, J. A., Lu, Y. Y., Burts, A. O., Lim, Y. H., Finn, M. G., Koberstein, J. T., Turro, N. J., Tirrell, D. A., Grubbs, R. H.  Core-clickable peg-branch-azide bivalent-bottle-brush polymers by romp: Grafting-through and clicking-to  Journal of the American Chemical Society  2011 133:559-566  DOI:10.1021/ja108441d
• Wang, K., Fu, C. Y., Khayat, R., Doerschuk, P. C., Johnson, J. E.  In vivo virus structures: Simultaneous classification, resolution enhancement, and noise reduction in whole-cell electron tomography  Journal of Structural Biology  2011 174:425-433  DOI:10.1016/j.jsb.2011.03.003
• Johnson, J. L., Hong, H., Monfregola, J., Catz, S. D.  Increased survival and reduced neutrophil infiltration of the liver in rab27a-but not munc13-4-deficient mice in lipopolysaccharide-induced systemic inflammation  Infection and Immunity  2011 79:3607-3618  DOI:10.1128/iai.05043-11
• Lanktree, M. B., Guo, Y. R., Murtaza, M., Glessner, J. T., Bailey, S. D., Onland-Moret, N. C., Lettre, G., Ongen, H., Rajagopalan, R., Johnson, T., Shen, H., Nelson, C. P., et al.  Meta-analysis of dense genecentric association studies reveals common and uncommon variants associated with height  American Journal of Human Genetics  2011 88:6-18  DOI:10.1016/j.ajhg.2010.11.007  PMID:21194676
• Lee, S., Doerschuk, P. C., Johnson, J. E.  Multiclass maximum-likelihood symmetry determination and motif reconstruction of 3-d helical objects from projection images for electron microscopy  IEEE Transactions on Image Processing  2011 20:1962-1976  DOI:10.1109/tip.2011.2107329
• Johnson, J. L., Hong, H., Monfregola, J., Kiosses, W. B., Catz, S. D.  Munc13-4 restricts motility of rab27a-expressing vesicles to facilitate lipopolysaccharide-induced priming of exocytosis in neutrophils  Journal of Biological Chemistry  2011 286:5647-5656  DOI:10.1074/jbc.M110.184762
• Tang, J. H., Lander, G. C., Olia, A., Li, R., Casjens, S., Prevelige, P., Cingolani, G., Baker, T. S., Johnson, J. E.  Peering down the barrel of a bacteriophage portal: The genome packaging and release valve in p22  Structure  2011 19:496-502  DOI:10.1016/j.str.2011.02.010
• Macheboeuf, P., Buffalo, C., Fu, C. Y., Zinkernagel, A. S., Cole, J. N., Johnson, J. E., Nizet, V., Ghosh, P.  Streptococcal m1 protein constructs a pathological host fibrinogen network  Nature  2011 472:64-68  DOI:10.1038/nature09967  PMID:21475196
• Khayat, R., Brunn, N., Speir, J. A., Hardham, J. M., Ankenbauer, R. G., Schneemann, A., Johnson, J. E.  The 2.3-angstrom structure of porcine circovirus 2  Journal of Virology  2011 85:7856-7862  DOI:10.1128/jvi.00737-11
• Huang, R. K., Khayat, R., Lee, K. K., Gertsman, I., Duda, R. L., Hendrix, R. W., Johnson, J. E.  The prohead-i structure of bacteriophage hk97: Implications for scaffold-mediated control of particle assembly and maturation  Journal of Molecular Biology  2011 408:541-554  DOI:10.1016/j.jmb.2011.01.016
• Olia, A. S., Prevelige, P. E., Johnson, J. E., Cingolani, G.  Three-dimensional structure of a viral genome-delivery portal vertex  Nature Structural & Molecular Biology  2011 18:597-603  DOI:10.1038/nsmb.2023  PMID:21499245
• Huang, R. K., Steinmetz, N. F., Fu, C. Y., Manchester, M., Johnson, J. E.  Transferrin-mediated targeting of bacteriophage hk97 nanoparticles into tumor cells  Nanomedicine  2011 6:55-68  DOI:10.2217/nnm.10.99
• Fu, C. Y., Johnson, J. E.  Viral life cycles captured in three-dimensions with electron microscopy tomography  Current Opinion in Virology  2011 1:125-133  DOI:10.1016/j.coviro.2011.06.008
• Miao, Y. L., Johnson, J. E., Ortoleva, P. J.  All-atom multiscale simulation of cowpea chlorotic mottle virus capsid swelling  Journal of Physical Chemistry B  2010 114:11181-11195  DOI:10.1021/jp102314e
• Khayat, R., Lander, G. C., Johnson, J. E.  An automated procedure for detecting protein folds from sub-nanometer resolution electron density  Journal of Structural Biology  2010 170:513-521  DOI:10.1016/j.jsb.2009.12.014
• Matsui, T., Tsuruta, H., Johnson, J. E.  Balanced electrostatic and structural forces guide the large conformational change associated with maturation of t=4 virus  Biophysical Journal  2010 98:1337-1343  DOI:10.1016/j.bpj.2009.12.4283
• Gertsman, I., Fu, C. Y., Huang, R., Komives, E. A., Johnson, J. E.  Critical salt bridges guide capsid assembly, stability, and maturation behavior in bacteriophage hk97  Molecular & Cellular Proteomics  2010 9:1752-1763  DOI:10.1074/mcp.M000039-MCP201
• Zhao, H. Y., Finch, C. J., Sequeira, R. D., Johnson, B. A., Johnson, J. E., Casjens, S. R., Tang, L.  Crystal structure of the DNA-recognition component of the bacterial virus sf6 genome-packaging machine  Proceedings of the National Academy of Sciences of the United States of America  2010 107:1971-1976  DOI:10.1073/pnas.0908569107
• Johnson, J. R., Johnston, B., Clabots, C., Kuskowski, M. A., Pendyala, S., DebRoy, C., Nowicki, B., Rice, J.  Escherichia coli sequence type st131 as an emerging fluoroquinolone-resistant uropathogen among renal transplant recipients  Antimicrobial Agents and Chemotherapy  2010 54:546-550  DOI:10.1128/aac.01089-09
• Speir, J. A., Taylor, D. J., Natarajan, P., Pringle, F. M., Ball, L. A., Johnson, J. E.  Evolution in action: N and c termini of subunits in related t=4 viruses exchange roles as molecular switches  Structure  2010 18:700-709  DOI:10.1016/j.str.2010.03.010
• Gertsman, I., Komives, E. A., Johnson, J. E.  Hk97 maturation studied by crystallography and h/(2)h exchange reveals the structural basis for exothermic particle transitions  Journal of Molecular Biology  2010 397:560-574  DOI:10.1016/j.jmb.2010.01.016
• Fu, C. Y., Wang, K., Gan, L., Lanman, J., Khayat, R., Young, M. J., Jensen, G. J., Doerschuk, P. C., Johnson, J. E.  In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography  Structure  2010 18:1579-1586  DOI:10.1016/j.str.2010.10.005
• Parent, K. N., Khayat, R., Tu, L. H., Suhanovsky, M. M., Cortines, J. R., Teschke, C. M., Johnson, J. E., Baker, T. S.  P22 coat protein structures reveal a novel mechanism for capsid maturation: Stability without auxiliary proteins or chemical crosslinks  Structure  2010 18:390-401  DOI:10.1016/j.str.2009.12.014
• Steinmetz, N. F., Mertens, M. E., Taurog, R. E., Johnson, J. E., Commandeur, U., Fischer, R., Manchester, M.  Potato virus x as a novel platform for potential biomedical applications  Nano Letters  2010 10:305-312  DOI:10.1021/nl9035753
• Johnson, J. L., Brzezinska, A. A., Tolmachova, T., Munafo, D. B., Ellis, B. A., Seabra, M. C., Hong, H., Catz, S. D.  Rab27a and rab27b regulate neutrophil azurophilic granule exocytosis and nadph oxidase activity by independent mechanisms  Traffic  2010 11:533-547  DOI:10.1111/j.1600-0854.2009.01029.x
• Cheung, C. L., Rubinstein, A. I., Peterson, E. J., Chatterji, A., Sabirianov, R. F., Mei, W. N., Lin, T., Johnson, J. E., DeYoreo, J. J.  Steric and electrostatic complementarity in the assembly of two-dimensional virus arrays  Langmuir  2010 26:3498-3505  DOI:10.1021/la903114s
• Banerjee, M., Speir, J. A., Kwan, M. H., Huang, R., Aryanpur, P. P., Bothner, B., Johnson, J. E.  Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate  Journal of Virology  2010 84:4737-4746  DOI:10.1128/jvi.02670-09
• Matsui, T., Lander, G. C., Khayat, R., Johnson, J. E.  Subunits fold at position-dependent rates during maturation of a eukaryotic rna virus  Proceedings of the National Academy of Sciences of the United States of America  2010 107:14111-14115  DOI:10.1073/pnas.1004221107
• Khayat, R., Fu, C. Y., Ortmann, A. C., Young, M. J., Johnson, J. E.  The architecture and chemical stability of the archaeal sulfolobus turreted icosahedral virus  Journal of Virology  2010 84:9575-9583  DOI:10.1128/jvi.00708-10
• Johnson, J. E.  Virus particle maturation: Insights into elegantly programmed nanomachines  Current Opinion in Structural Biology  2010 20:210-216  DOI:10.1016/j.sbi.2010.01.004
• Prust, C. J., Doerschuk, P. C., Lander, G. C., Johnson, J. E.  Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage p22 and maximum likelihood versions of fourier shell correlation appropriate for measuring resolution of spherical or cylindrical objects  Journal of Structural Biology  2009 167:185-199  DOI:10.1016/j.jsb.2009.04.013
• Milazzo, A. C., Lanman, J., Bouwer, J. C., Jin, L., Peltier, S. T., Johnson, J. E., Kleinfelder, S., Xuong, N. H., Ellisman, M. H.  Advanced detector development for electron microscopy enables new insight into the study of the virus life cycle in cells and alzheimer's disease  Microscopy and Microanalysis  2009 15:8-9  DOI:10.1017/s1431927609098766
• Gertsman, I., Gan, L., Guttman, M., Lee, K., Speir, J. A., Duda, R. L., Hendrix, R. W., Komives, E. A., Johnson, J. E.  An unexpected twist in viral capsid maturation  Nature  2009 458:646-650  DOI:10.1038/nature07686  PMID:19204733
• Beitelshees, A. L., Navare, H., Wang, D. X., Gong, Y., Wessel, J., Moss, J. I., Langaee, T. Y., Cooper-DeHoff, R. M., Sadee, W., Pepine, C. J., Schork, N. J., Johnson, J. A.  Cacna1c gene polymorphisms, cardiovascular disease outcomes, and treatment response  Circulation-Cardiovascular Genetics  2009 2:362-370  DOI:10.1161/circgenetics.109.857839
• Matsui, T., Lander, G., Johnson, J. E.  Characterization of large conformational changes and autoproteolysis in the maturation of a t=4 virus capsid  Journal of Virology  2009 83:1126-1134  DOI:10.1128/jvi.01859-08
• Banerjee, M., Khayat, R., Walukiewicz, H. E., Odegard, A. L., Schneemann, A., Johnson, J. E.  Dissecting the functional domains of a nonenveloped virus membrane penetration peptide  Journal of Virology  2009 83:6929-6933  DOI:10.1128/jvi.02299-08
• Munafo, D. B., Johnson, J. L., Brzezinska, A. A., Ellis, B. A., Wood, M. R., Catz, S. D.  Dnase i inhibits a late phase of reactive oxygen species production in neutrophils  Journal of Innate Immunity  2009 1:527-542  DOI:10.1159/000235860
• Ambrose, R. L., Lander, G. C., Maaty, W. S., Bothner, B., Johnson, J. E., Johnson, K. N.  Drosophila a virus is an unusual rna virus with a t=3 icosahedral core and permuted rna-dependent rna polymerase  Journal of General Virology  2009 90:2191-2200  DOI:10.1099/vir.0.012104-0
• Tang, J. H., Lee, K. K., Bothner, B., Baker, T. S., Yeager, M., Johnson, J. E.  Dynamics and stability in maturation of a t=4 virus  Journal of Molecular Biology  2009 392:803-812  DOI:10.1016/j.jmb.2009.07.038
• Fulton, J., Bothner, B., Lawrence, M., Johnson, J. E., Douglas, T., Young, M.  Genetics, biochemistry and structure of the archaeal virus stiv  Biochemical Society Transactions  2009 37:114-117  DOI:10.1042/bst370114
• Odegard, A. L., Kwan, M. H., Walukiewicz, H. E., Banerjee, M., Schneemann, A., Johnson, J. E.  Low endocytic ph and capsid protein autocleavage are critical components of flock house virus cell entry  Journal of Virology  2009 83:8628-8637  DOI:10.1128/jvi.00873-09
• Cheng, A., Speir, J. A., Yuan, Y. A., Johnson, J. E., Wong, S. M.  Preliminary x-ray data analysis of crystalline hibiscus chlorotic ringspot virus  Acta Crystallographica Section F-Structural Biology and Crystallization Communications  2009 65:589-593  DOI:10.1107/s1744309109015760  PMID:19478438
• Johnson, A. D., Gong, Y., Wang, D., Langaee, T. Y., Shin, J., Cooper-DeHoff, R. M., Schork, N. J., Binkley, P., Pepine, C. J., Johnson, J. A., Sadee, W.  Promoter polymorphisms in ace (angiotensin i-converting enzyme) associated with clinical outcomes in hypertension  Clinical Pharmacology & Therapeutics  2009 85:36-44  DOI:10.1038/clpt.2008.194
• Lee, S., Doerschuk, P. C., Johnson, J. E.  Reciprocal space representations of helical objects and their projection images for helices constructed from motifs without spherical symmetry  Ultramicroscopy  2009 109:253-263  DOI:10.1016/j.ultramic.2008.10.014
• Brzezinska, A. A., Johnson, J. L., Munafo, D. B., Ellis, B. A., Catz, S. D.  Signalling mechanisms for toll-like receptor-activated neutrophil exocytosis: Key roles for interleukin-1-receptor-associated kinase-4 and phosphatidylinositol 3-kinase but not toll/il-1 receptor (tir) domain-containing adaptor inducing ifn-beta (trif)  Immunology  2009 127:386-397  DOI:10.1111/j.1365-2567.2008.02980.x
• Devkota, B., Petrov, A. S., Lemieux, S., Boz, M. B., Tang, L., Schneemann, A., Johnson, J. E., Harvey, S. C.  Structural and electrostatic characterization of pariacoto virus: Implications for viral assembly  Biopolymers  2009 91:530-538  DOI:10.1002/bip.21168
• Szymczyna, B. R., Taurog, R. E., Young, M. J., Snyder, J. C., Johnson, J. E., Williamson, J. R.  Synergy of nmr, computation, and x-ray crystallography for structural biology  Structure  2009 17:499-507  DOI:10.1016/j.str.2009.03.001
• Dinglasan, R. R., Devenport, M., Florens, L., Johnson, J. R., McHugh, C. A., Donnelly-Doman, M., Carucci, D. J., Yates, J. R., Jacobs-Lorena, M.  The anopheles gambiae adult midgut peritrophic matrix proteome  Insect Biochemistry and Molecular Biology  2009 39:125-134  DOI:10.1016/j.ibmb.2008.10.010
• Johnson, J., Maher, P., Hanneken, A.  The flavonoid, eriodictyol, induces long-term protection in arpe-19 cells through its effects on nrf2 activation and phase 2 gene expression  Investigative Ophthalmology & Visual Science  2009 50:2398-2406  DOI:10.1167/iovs.08-2088
• Lander, G. C., Khayat, R., Li, R., Prevelige, P. E., Potter, C. S., Carragher, B., Johnson, J. E.  The p22 tail machine at subnanometer resolution reveals the architecture of an infection conduit  Structure  2009 17:789-799  DOI:10.1016/j.str.2009.04.006
• Carrillo-Tripp, M., Shepherd, C. M., Borelli, I. A., Venkataraman, S., Lander, G., Natarajan, P., Johnson, J. E., Brooks, C. L., Reddy, V. S.  Viperdb(2): An enhanced and web api enabled relational database for structural virology  Nucleic Acids Research  2009 37:D436-D442  DOI:10.1093/nar/gkn840
• Le Roch, K. G., Johnson, J. R., Ahiboh, H., Chung, D. W. D., Prudhomme, J., Plouffe, D., Henson, K., Zhou, Y. Y., Witola, W., Yates, J. R., Ben Mamoun, C., Winzeler, E. A., et al.  A systematic approach to understand the mechanism of action of the bisthiazolium compound t4 on the human malaria parasite, plasmodium falciparum  BMC Genomics  2008 9:513  DOI:10.1186/1471-2164-9-513
• Banerjee, M., Johnson, J. E.  Activation, exposure and penetration of virally encoded, membrane-active polypeptides during non-enveloped virus entry  Current Protein & Peptide Science  2008 9:16-27
• Gerhard, T., Gong, Y., Beitelshees, A. L., Mao, X., Lobmeyer, M. T., Cooper-DeHoff, R. M., Langaee, T. Y., Schork, N. J., Shriver, M. D., Pepine, C. J., Johnson, J. A., Investigators, Invest  Alpha-adducin polymorphism associated with increased risk of adverse cardiovascular outcomes: Results from genetic substudy of the international verapamil sr-trandolapril study (invest-genes)  American Heart Journal  2008 156:397-404  DOI:10.1016/j.ahj.2008.03.007
• Gan, L., Johnson, J. E.  An optimal exposure strategy for cryoprotected virus crystals with lattice constants greater than 1000 angstrom  Journal of Synchrotron Radiation  2008 15:223-226  DOI:10.1107/s0909049507064813
• Nemecek, D., Lander, G. C., Johnson, J. E., Casjens, S. R., Thomas, G. J.  Assembly architecture and DNA binding of the bacteriophage p22 terminase small subunit  Journal of Molecular Biology  2008 383:494-501  DOI:10.1016/j.jmb.2008.08.050
• Lander, G. C., Evilevitch, A., Jeembaeva, M., Potter, C. S., Carragher, B., Johnson, J. E.  Bacteriophage lambda stabilization by auxiliary protein gpd: Timing, location, and mechanism of attachment determined by cryo-em  Structure  2008 16:1399-1406  DOI:10.1016/j.str.2008.05.016
• Pacanowski, M. A., Gong, Y., Cooper-DeHoff, R. M., Schork, N. J., Shriver, M. D., Langaee, T. Y., Pepine, C. J., Johnson, J. A., Investigators, Invest  Beta-adrenergic receptor gene polymorphisms and beta-blocker treatment outcomes in hypertension  Clinical Pharmacology & Therapeutics  2008 84:715-721  DOI:10.1038/clpt.2008.139
• Johnson, J. A., Finn, M. G., Koberstein, J. T., Turro, N. J.  Construction of linear polymers, dendrimers, networks, and other polymeric architectures by copper-catalyzed azide-alkyne cycloaddition "click" chemistry  Macromolecular Rapid Communications  2008 29:1052-1072  DOI:10.1002/marc.200800208
• Kang, S., Lander, G. C., Johnson, J. E., Prevelige, P. E.  Development of bacteriophage p22 as a platform for molecular display: Genetic and chemical modifications of the procapsid exterior surface  Chembiochem  2008 9:514-518  DOI:10.1002/cbic.200700555
• Kato, N., Sakata, T., Breton, G., Le Roch, K. G., Nagle, A., Andersen, C., Bursulaya, B., Henson, K., Johnson, J., Kumar, K. A., Marr, F., Mason, D., et al.  Gene expression signatures and small-molecule compounds link a protein kinase to plasmodium falciparum motility  Nature Chemical Biology  2008 4:347-356  DOI:10.1038/nchembio.87
• Young, J. A., Johnson, J. R., Benner, C., Yan, S. F., Chen, K., Le Roch, K. G., Zhou, Y. Y., Winzeler, E. A.  In silico discovery of transcription regulatory elements in plasmodium falciparum  BMC Genomics  2008 9:70  DOI:10.1186/1471-2164-9-70
• Seetharam, R. N., Blum, A. S., Soto, C. M., Whitley, J. L., Sapsford, K. E., Chatterji, A., Lin, T. W., Johnson, J. E., Guerra, C., Satir, P., Ratna, B. R.  Long term storage of virus templated fluorescent materials for sensing applications  Nanotechnology  2008 19:105504  DOI:10.1088/0957-4484/19/10/105504
• Johnson, J. E.  Multi-disciplinary studies of viruses: The role of structure in shaping the questions and answers  Journal of Structural Biology  2008 163:246-253  DOI:10.1016/j.jsb.2008.03.013
• Patra, K. P., Johnson, J. R., Cantin, G. T., Yates, J. R., Vinetz, J. M.  Proteomic analysis of zygote and ookinete stages of the avian malaria parasite plasmodium gallinaceum delineates the homologous proteomes of the lethal human malaria parasite plasmodium falciparum  Proteomics  2008 8:2492-2499  DOI:10.1002/pmic.200700727
• Walukiewicz, H. E., Banerjee, M., Schneemann, A., Johnson, J. E.  Rescue of maturation-defective flock house virus infectivity with noninfectious, mature, viruslike particles  Journal of Virology  2008 82:2025-2027  DOI:10.1128/jvi.02278-07
• Sosinsky, G. E., Crum, J., Jones, Y. Z., Lanman, J., Smarr, B., Terada, M., Martone, M. E., Deerinck, T. J., Johnson, J. E., Ellisman, M. H.  The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications  Journal of Structural Biology  2008 161:359-371  DOI:10.1016/j.jsb.2007.09.002
• Brzezinska, A. A., Johnson, J. L., Munafo, D. B., Crozat, K., Beutler, B., Kiosses, W. B., Ellis, B. A., Catz, S. D.  The rab27a effectors jfc1/slp1 and munc13-4 regulate exocytosis of neutrophil granules  Traffic  2008 9:2151-2164  DOI:10.1111/j.1600-0854.2008.00838.x
• Lee, K. K., Gan, L., Tsuruta, H., Moyer, C., Conway, J. F., Duda, R. L., Hendrix, R. W., Steven, A. C., Johnson, J. E.  Virus capsid expansion driven by the capture of mobile surface loops  Structure  2008 16:1491-1502  DOI:10.1016/j.str.2008.06.014
• Lanman, J., Crum, J., Deerinck, T. J., Gaietta, G. M., Schneemann, A., Sosinsky, G. E., Ellisman, M. H., Johnson, J. E.  Visualizing flock house virus infection in drosophila cells with correlated fluorescence and electron microscopy  Journal of Structural Biology  2008 161:439-446  DOI:10.1016/j.jsb.2007.09.009
• Liu, Y. X., Kern, J. T., Walker, J. R., Johnson, J. A., Schultz, P. G., Luesch, H.  A genomic screen for activators of the antioxidant response element  Proceedings of the National Academy of Sciences of the United States of America  2007 104:5205-5210  DOI:10.1073/pnas.0700898104
• Battiste, J., Helms, A. W., Kim, E. J., Savage, T. K., Lagace, D. C., Mandyam, C. D., Eisch, A. J., Miyoshi, G., Johnson, J. E.  Ascl1 defines sequentially generated lineage-restricted neuronal and oligodendrocyte precursor cells in the spinal cord  Development  2007 134:285-293  DOI:10.1242/dev.02727
• Pacquelet, S., Johnson, J. L., Ellis, B. A., Brzezinska, A. A., Lane, W. S., Munafo, D. B., Catz, S. D.  Cross-talk between irak-4 and the nadph oxidase  Biochemical Journal  2007 403:451-461  DOI:10.1042/bj20061184
• Johnson, J. E., Chiu, W.  DNA packaging and delivery machines in tailed bacteriophages  Current Opinion in Structural Biology  2007 17:237-243  DOI:10.1016/j.sbi.2007.03.011
• Lee, J., Doerschuk, P. C., Johnson, J. E.  Exact reduced-complexity maximum likelihood reconstruction of multiple 3-d objects from unlabeled unoriented 2-d projections and electron microscopy of viruses  IEEE Transactions on Image Processing  2007 16:2865-2878  DOI:10.1109/tip.2007.908298
• Beitelshees, A. L., Gong, Y., Wang, D., Schork, N. J., Cooper-DeHoff, R. M., Langaee, T. Y., Shriver, M. D., Sadee, W., Knot, H. J., Pepine, C. J., Johnson, J. A., Investigators, Invest  Kcnmb1 genotype influences response to verapamil sir and adverse outcomes in the international verapamil sr/trandolapril study (invest)  Pharmacogenetics and Genomics  2007 17:719-729  DOI:10.1097/FPC.0b013e32810f2e3c
• Poliakov, A., van Duijn, E., Lander, G., Fu, C. Y., Johnson, J. E., Prevelige, P. E., Heck, A. J. R.  Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies  Journal of Structural Biology  2007 157:371-383  DOI:10.1016/j.jsb.2006.09.003
• Cass, C. L., Johnson, J. R., Califf, L. L., Xu, T., Hernandez, H. J., Stadecker, M. J., Yates, J. R., Williams, D. L.  Proteomic analysis of schistosoma mansoni egg secretions  Molecular and Biochemical Parasitology  2007 155:84-93  DOI:10.1016/j.molbiopara.2007.06.002
• Dong, M. Q., Venable, J. D., Au, N., Xu, T., Park, S. K., Cociorva, D., Johnson, J. R., Dillin, A., Yates, J. R.  Quantitative mass spectrometry identifies insulin signaling targets in c-elegans  Science  2007 317:660-663  DOI:10.1126/science.1139952
• Munafo, D. B., Johnson, J. L., Ellis, B. A., Rutschmann, S., Beutler, B., Catz, S. D.  Rab27a is a key component of the secretory machinery of azurophilic granules in granulocytes  Biochemical Journal  2007 402:229-239  DOI:10.1042/bj20060950
• Gong, Y., Beitelshees, A. L., Wessel, J., Langaee, T. Y., Schork, N. J., Johnson, J. A.  Single nucleotide polymorphism discovery and haplotype analysis of ca2+-dependent k+ channel beta-1 subunit  Pharmacogenetics and Genomics  2007 17:267-275  DOI:10.1097/FPC.0b013e3280105235
• Johnson, J. A., Finn, M. G., Koberstein, J. T., Turro, N. J.  Synthesis of photocleavable linear macromonomers by atrp and star macromonomers by a tandem atrp-click reaction: Precursors to photodegradable model networks  Macromolecules  2007 40:3589-3598  DOI:10.1021/ma062862b
• Sapsford, K. E., Soto, C. M., Blum, A. S., Chatterji, A., Lin, T. W., Johnson, J. E., Ligler, F. S., Ratna, B. R.  A cowpea mosaic virus nanoscaffold for multiplexed antibody conjugation: Application as an immunoassay tracer  Biosensors & Bioelectronics  2006 21:1668-1673  DOI:10.1016/j.bios.2005.09.003
• Kidgell, C., Volkman, S. K., Daily, J., Borevitz, J. O., Plouffe, D., Zhou, Y. Y., Johnson, J. R., Le Roch, K. G., Sarr, O., Ndir, O., Mboup, S., Batalov, S., et al.  A systematic map of genetic variation in plasmodium falciparum  PLoS Pathogens  2006 2:562-577  DOI:10.1371/journal.ppat.0020057
• Martin, B. D., Soto, C. M., Blum, A. S., Sapsford, K. E., Whitley, J. L., Johnson, J. E., Chatterji, A., Ratna, B. R.  An engineered virus as a bright fluorescent tag and scaffold for cargo proteins - capture and transport by gliding microtubules  Journal of Nanoscience and Nanotechnology  2006 6:2451-2460  DOI:10.1166/jnn.2006.548
• Gan, L., Speir, J. A., Conway, J. F., Lander, G., Cheng, N. Q., Firek, B. A., Hendrix, R. W., Duda, R. L., Liljas, L., Johnson, J. E.  Capsid conformational sampling in hk97 maturation visualized by x-ray crystallography and cryo-em  Structure  2006 14:1655-1665  DOI:10.1016/j.str.2006.09.006
• Hu, K., Johnson, J., Florens, L., Fraunholz, M., Suravajjala, S., DiLullo, C., Yates, J., Roos, D. S., Murray, J. M.  Cytoskeletal components of an invasion machine - the apical complex of toxoplasma gondii  PLoS Pathogens  2006 2:121-138  DOI:10.1371/journal.ppat.0020013
• Speir, J. A., Bothner, B., Qu, C. X., Willits, D. A., Young, M. J., Johnson, J. E.  Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics  Journal of Virology  2006 80:3582-3591  DOI:10.1128/jvi.80.7.3582-3591.2006
• Hanneken, A., Lin, F. F., Johnson, J., Maher, P.  Flavonoids protect human retinal pigment epithelial cells from oxidative-stress-induced death  Investigative Ophthalmology & Visual Science  2006 47:3164-3177  DOI:10.1167/iovs.04-1369
• Soto, C. M., Blum, A. S., Vora, G. J., Lebedev, N., Meador, C. E., Won, A. P., Chatterji, A., Johnson, J. E., Ratna, B. R.  Fluorescent signal amplification of carbocyanine dyes using engineered viral nanoparticles  Journal of the American Chemical Society  2006 128:5184-5189  DOI:10.1021/ja058574x
• Johnson, J. L., Ellis, B. A., Munafo, D. B., Brzezinska, A. A., Catz, S. D.  Gene transfer and expression in human neutrophils. The phox homology domain of p47(phox) translocates to the plasma membrane but not to the membrane of mature phagosomes  BMC Immunology  2006 7:28  DOI:10.1186/1471-2172-7-28
• Ochoa, W. F., Chatterji, A., Lin, T. W., Johnson, J. E.  Generation and structural analysis of reactive empty particles derived from an icosahedral virus  Chemistry & Biology  2006 13:771-778  DOI:10.1016/j.chembiol.2006.05.014
• Tang, L., Gilcrease, E. B., Casjens, S. R., Johnson, J. E.  Highly discriminatory binding of capsid-cementing proteins in bacteriophage l  Structure  2006 14:837-845  DOI:10.1016/j.str.2006.03.010
• Walukiewicz, H. E., Johnson, J. E., Schneemann, A.  Morphological changes in the t=3 capsid of flock house virus during cell entry  Journal of Virology  2006 80:615-622  DOI:10.1128/jvi.80.2.615-622.2006
• Cheung, C. L., Chung, S. W., Chatterji, A., Lin, T. W., Johnson, J. E., Hok, S., Perkins, J., De Yoreo, J. J.  Physical controls on directed virus assembly at nanoscale chemical templates  Journal of the American Chemical Society  2006 128:10801-10807  DOI:10.1021/ja0616884
• Taylor, D. J., Speir, J. A., Reddy, V., Cingolani, G., Pringle, F. M., Ball, L. A., Johnson, J. E.  Preliminary x-ray characterization of authentic providence virus and attempts to express its coat protein gene in recombinant baculovirus  Archives of Virology  2006 151:155-165  DOI:10.1007/s00705-005-0637-3
• Kalfa, T. A., Pushkaran, S., Mohandas, N., Hartwig, J. H., Fowler, V. M., Johnson, J. F., Joiner, C. H., Williams, D. A., Zheng, Y.  Rac gtpases regulate the morphology and deformability of the erythrocyte cytoskeleton  Blood  2006 108:3637-3645  DOI:10.1182/blood-2006-03-005942
• Maia, L. F., Soares, M. R., Valente, A. P., Almeida, F. C. L., Oliveira, A. C., Gomes, A. M. O., Freitas, M. S., Schneemann, A., Johnson, J. E., Silva, J. L.  Structure of a membrane-binding domain from a non-enveloped animal virus - insights into the mechanism of membrane permeability and cellular entry  Journal of Biological Chemistry  2006 281:29278-29286  DOI:10.1074/jbc.M604689200
• Johnson, J. A., Lewis, D. R., Az, Dddu, Finn, M. G., Koberstein, J. T., Turro, N. J.  Synthesis of degradable model networks via atrp and click chemistry  Journal of the American Chemical Society  2006 128:6564-6565  DOI:10.1021/ja0612910
• Blum, A. S., Soto, C. M., Wilson, C. D., Whitley, J. L., Moore, M. H., Sapsford, K. E., Lin, T. W., Chatterji, A., Johnson, J. E., Ratna, B. R.  Templated self-assembly of quantum dots from aqueous solution using protein scaffolds  Nanotechnology  2006 17:5073-5079  DOI:10.1088/0957-4484/17/20/006
• Tang, J. H., Johnson, J. M., Dryden, K. A., Young, M. J., Zlotnick, A.  The role of subunit hinges and molecular "switches" in the control of viral capsid polymorphism  Journal of Structural Biology  2006 154:59-67  DOI:10.1016/j.jsb.2005.10.013
• Lander, G. C., Tang, L., Casjens, S. R., Gilcrease, E. B., Prevelige, P., Poliakov, A., Potter, C. S., Carragher, B., Johnson, J. E.  The structure of an infectious p22 virion shows the signal for headful DNA packaging  Science  2006 312:1791-1795  DOI:10.1126/science.1127981
• Wikoff, W. R., Conway, J. F., Tang, J. H., Lee, K. K., Gan, L., Cheng, N. Q., Duda, R. L., Hendrix, R. W., Steven, A. C., Johnson, J. E.  Time-resolved molecular dynamics of bacteriophage hk97 capsid maturation interpreted by electron cryo-microscopy and x-ray crystallography  Journal of Structural Biology  2006 153:300-306  DOI:10.1016/j.jsb.2005.11.009
• Shepherd, C. M., Borelli, I. A., Lander, G., Natarajan, P., Siddavanahalli, V., Bajaj, C., Johnson, J. E., Brooks, C. L., Reddy, V. S.  Viperdb: A relational database for structural virology  Nucleic Acids Research  2006 34:D386-D389  DOI:10.1093/nar/gkj032
• Chatterji, A., Ochoa, W. F., Ueno, T., Lin, T. W., Johnson, J. E.  A virus-based nanoblock with tunable electrostatic properties  Nano Letters  2005 5:597-602  DOI:10.1021/nl048007s
• Johnson, J. L., Pacquelet, S., Lane, W. S., Eam, B., Catz, S. D.  Akt regulates the subcellular localization of the rab27a-binding protein jfc1 by phosphorylation  Traffic  2005 6:667-681  DOI:10.1111/j.1600-0854.2005.00308.x
• Blum, A. S., Soto, C. M., Wilson, C. D., Brower, T. L., Pollack, S. K., Schull, T. L., Chatterji, A., Lin, T. W., Johnson, J. E., Amsinck, C., Franzon, P., Shashidhar, R., et al.  An engineered virus as a scaffold for three-dimensional self-assembly on the nanoscale  Small  2005 1:702-706  DOI:10.1002/smll.200500021
• Cheung, C. L., Chung, S. W., De Yoreo, J. J., Chatterji, A., Lin, T., Johnson, J. E.  Atomic force microscopy investigation of virus aggregation and assembly at chemical templates formed by scanned probe nanolithography  Scanning  2005 27:99-100
• Lee, K. K., Tsuruta, H., Hendrix, R. W., Duda, R. L., Johnson, J. E.  Cooperative reorganization of a 420 subunit virus capsid  Journal of Molecular Biology  2005 352:723-735  DOI:10.1016/j.jmb.2005.07.024
• Medintz, I. L., Sapsford, K. E., Konnert, J. H., Chatterji, A., Lin, T. W., Johnson, J. E., Mattoussi, H.  Decoration of discretely immobilized cowpea mosaic virus with luminescent quantum dots  Langmuir  2005 21:5501-5510  DOI:10.1021/la0468287
• Natarajan, P., Lander, G. C., Shepherd, C. M., Reddy, V. S., Brooks, C. L., Johnson, J. E.  Exploring icosahedral virus structures with viper  Nature Reviews Microbiology  2005 3:809-817  DOI:10.1038/nrmicro1247
• Taylor, D. J., Johnson, J. E.  Folding and particle assembly are disrupted by single-point mutations near the autocatalytic cleavage site of nudaurelia capensis omega virus capsid protein  Protein Science  2005 14:401-408  DOI:10.1110/ps.041054605
• Bothner, B., Taylor, D., Jun, B., Lee, K. K., Siuzdak, G., Schlutz, C. P., Johnson, J. E.  Maturation of a tetravirus capsid alters the dynamic properties and creates a metastable complex  Virology  2005 334:17-27  DOI:10.1016/j.virol.2005.01.017
• du Plessis, L., Hendry, D. A., Dorrington, R. A., Hanzlik, T. N., Johnson, J. E., Appel, M.  Revised rna2 sequence of the tetravirus, nudaurelia capensis omega virus (n omega v)  Archives of Virology  2005 150:2397-2402  DOI:10.1007/s00705-005-0575-0
• Khayat, R., Tang, L., Larson, E. T., Lawrence, C. M., Young, M., Johnson, J. E.  Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses  Proceedings of the National Academy of Sciences of the United States of America  2005 102:18944-18949  DOI:10.1073/pnas.0506383102
• Girard, E., Kahn, R., Mezouar, M., Dhaussy, A. C., Lin, T. W., Johnson, J. E., Fourme, R.  The first crystal structure of a macromolecular assembly under high pressure: Cpmv at 330 mpa  Biophysical Journal  2005 88:3562-3571  DOI:10.1529/biophysj.104.058636
• Lin, T. W., Schildkamp, W., Brister, K., Doerschuk, P. C., Somayazulu, M., Mao, H. K., Johnson, J. E.  The mechanism of high-pressure-induced ordering in a macromolecular crystal  Acta Crystallographica Section D-Biological Crystallography  2005 61:737-743  DOI:10.1107/s0907444905000053  PMID:15930631
• Johnson, J. L., Ellis, B. A., Noack, D., Seabra, M. C., Catz, S. D.  The rab27a-binding protein, jfc1, regulates androgen-dependent secretion of prostate-specific antigen and prostatic-specific acid phosphatase  Biochemical Journal  2005 391:699-710  DOI:10.1042/bj20050380
• Tang, J. H., Naitow, H., Gardner, N. A., Kolesar, A., Tang, L., Wickner, R. B., Johnson, J. E.  The structural basis of recognition and removal of cellular mrna 7-methyl g 'caps' by a viral capsid protein: A unique viral response to host defense  Journal of Molecular Recognition  2005 18:158-168  DOI:10.1002/jmr.724
• Tang, L., Marion, W. R., Cingolani, G., Prevelige, P. E., Johnson, J. E.  Three-dimensional structure of the bacteriophage p22 tail machine  EMBO Journal  2005 24:2087-2095  DOI:10.1038/sj.emboj.7600695
• Falkner, J. C., Turner, M. E., Bosworth, J. K., Trentler, T. J., Johnson, J. E., Lin, T. W., Colvin, V. L.  Virus crystals as nanocomposite scaffolds  Journal of the American Chemical Society  2005 127:5274-5275  DOI:10.1021/ja04496m
• Girard, E., Kahn, R., Ascone, I., Mezouar, M., Dhaussy, A. C., Lin, T. W., Johnson, J. E., Fourme, R.  A new dimension in structural biology: Fully fledged high-pressure macromolecular crystallography  High Pressure Research  2004 24:173-182  DOI:10.1080/089579550410001661873
• Sam-Yellowe, T. Y., Florens, L., Johnson, J. R., Wang, T. M., Drazba, J. A., Le Roch, K. G., Zhou, Y. Y., Batalov, S., Carucci, D. J., Winzeler, E. A., Yates, J. R.  A plasmodium gene family encoding maurer's cleft membrane proteins: Structural properties and expression profiling  Genome Research  2004 14:1052-1059  DOI:10.1101/gr.2126104
• Chatterji, A., Ochoa, W., Shamieh, L., Salakian, S. P., Wong, S. M., Clinton, G., Ghosh, P., Lin, T. W., Johnson, J. E.  Chemical conjugation of heterologous proteins on the surface of cowpea mosaic virus  Bioconjugate Chemistry  2004 15:807-813  DOI:10.1021/bc0402888
• Gan, L., Conway, J. F., Firek, B. A., Cheng, N. Q., Hendrix, R. W., Steven, A. C., Johnson, J. E., Duda, R. L.  Control of crosslinking by quaternary structure changes during bacteriophage hk97 maturation  Molecular Cell  2004 14:559-569  DOI:10.1016/j.molcel.2004.05.015
• Blum, A. S., Soto, C. M., Wilson, C. D., Cole, J. D., Kim, M., Gnade, B., Chatterji, A., Ochoa, W. F., Lin, T. W., Johnson, J. E., Ratna, B. R.  Cowpea mosaic virus as a scaffold for 3-d patterning of gold nanoparticles  Nano Letters  2004 4:867-870  DOI:10.1021/nl0497474
• Lee, K. K., Gan, L., Tsuruta, H., Hendrix, R. W., Duda, R. L., Johnson, J. E.  Evidence that a local refolding event triggers maturation of hk97 bacteriophage capsid  Journal of Molecular Biology  2004 340:419-433  DOI:10.1016/j.jmc.2004.05.008
• Le Roch, K. G., Johnson, J. R., Florens, L., Zhou, Y. Y., Santrosyan, A., Grainger, M., Yan, S. F., Williamson, K. C., Holder, A. A., Carucci, D. J., Yates, J. R., Winzeler, E. A.  Global analysis of transcript and protein levels across the plasmodium falciparum life cycle  Genome Research  2004 14:2308-2318  DOI:10.1101/gr.2523904
• Brumfield, S., Willits, D., Tang, L., Johnson, J. E., Douglas, T., Young, M.  Heterologous expression of the modified coat protein of cowpea chlorotic mottle bromovirus results in the assembly of protein cages with altered architectures and function  Journal of General Virology  2004 85:1049-1053  DOI:10.1099/vir.0.19688-0
• Johnson, K. N., Tang, L., Johnson, J. E., Ball, L. A.  Heterologous rna encapsidated in pariacoto virus-like particles forms a dodecahedral cage similar to genomic rna in wild-type virions  Journal of Virology  2004 78:11371-11378  DOI:10.1128/jvi.78.20.11371-11378.2004
• McDonald, W. H., Tabb, D. L., Sadygov, R. G., MacCoss, M. J., Venable, J., Graumann, J., Johnson, J. R., Cociorva, D., Yates, J. R.  Ms1, ms2, and sqt - three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications  Rapid Communications in Mass Spectrometry  2004 18:2162-2168  DOI:10.1002/rcm.1603
• Strable, E., Johnson, J. E., Finn, M. G.  Natural nanochemical building blocks: Icosahedral virus particles organized by attached oligonucleotides  Nano Letters  2004 4:1385-1389  DOI:10.1021/nl0493850
• Chatterji, A., Ochoa, W. F., Paine, M., Ratna, B. R., Johnson, J. E., Lin, T. W.  New addresses on an addressable virus nanoblock: Uniquely reactive lys residues on cowpea mosaic virus  Chemistry & Biology  2004 11:855-863  DOI:10.1016/j.chembiol.2004.04.011
• Tihova, M., Dryden, K. A., Le, T. V. L., Harvey, S. C., Johnson, J. E., Yeager, M., Schneemann, A.  Nodavirus coat protein imposes dodecahedral rna structure independent of nucleotide sequence and length  Journal of Virology  2004 78:2897-2905  DOI:10.1128/jvi.78.6.2897-2905.2004
• Johnson, J. R., Florens, L., Carucci, D. J., Yates, J. R.  Proteomics in malaria  Journal of Proteome Research  2004 3:296-306  DOI:10.1021/pr0340781
• Lee, K. K., Tang, J. H., Taylor, D., Bothner, B., Johnson, J. E.  Small compounds targeted to subunit interfaces arrest maturation in a nonenveloped, icosahedral animal virus  Journal of Virology  2004 78:7208-7216  DOI:10.1128/jvi.78.13.7208.7216.2004
• Ling, I. T., Florens, L., Dluzewski, A. R., Kaneko, O., Grainger, M., Lim, Bysy, Tsuboi, T., Hopkins, J. M., Johnson, J. R., Torii, M., Bannister, L. H., Yates, J. R., et al.  The plasmodium falciparum clag9 gene encodes a rhoptry protein that is transferred to the host erythrocyte upon invasion  Molecular Microbiology  2004 52:107-118  DOI:10.1111/j.1365-2958.2003.03969.x
• Helgstrand, C., Munshi, S., Johnson, J. E., Liljas, L.  The refined structure of nudaurelia capensis omega virus reveals control elements for a t=4 capsid maturation  Virology  2004 318:192-203  DOI:10.1016/j.virol.2003.08.045
• Rice, G., Tang, L., Stedman, K., Roberto, F., Spuhler, J., Gillitzer, E., Johnson, J. E., Douglas, T., Young, M.  The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life  Proceedings of the National Academy of Sciences of the United States of America  2004 101:7716-7720  DOI:10.1073/pnas.0401773101
• Schwarcz, W. D., Barroso, S. P. C., Gomes, A. M. O., Johnson, J. E., Schneemann, A., Oliveira, A. C., Silva, J. L.  Virus stability and protein-nucleic acid interaction as studied by high-pressure effects on nodaviruses  Cellular and Molecular Biology  2004 50:419-427
• Johnson, J. E.  Virus structure analysis with synchrotron radiation: Methods and results  Journal of Synchrotron Radiation  2004 11:89-92  DOI:10.1107/s0909049503023884
• Yin, Z. H., Zheng, Y. L., Doerschuk, P. C., Natarajan, P., Johnson, J. E.  A statistical approach to computer processing of cryo-electron microscope images: Virion classification and 3-d reconstruction  Journal of Structural Biology  2003 144:24-50  DOI:10.1016/j.jsb.2003.09.023
• Catz, S. D., Johnson, J. L.  Bcl-2 in prostate cancer: A minireview  Apoptosis  2003 8:29-37  DOI:10.1023/a:1021692801278
• Lee, K. K., Johnson, J. E.  Complementary approaches to structure determination of icosahedral viruses  Current Opinion in Structural Biology  2003 13:558-569  DOI:10.1016/j.sbi.2003.09.007
• Taylor, D. J., Wang, Q., Bothner, B., Natarajan, P., Finn, M. G., Johnson, J. E.  Correlation of chemical reactivity of nudaurelia capensis omega virus with a ph-induced conformational change  Chemical Communications  2003 2770-2771  DOI:10.1039/b310533d
• Wikoff, W. R., Che, Z. W., Duda, R. L., Hendrix, R. W., Johnson, J. E.  Crystallization and preliminary analysis of a dsdna bacteriophage capsid intermediate: Prohead ii of hk97  Acta Crystallographica Section D-Biological Crystallography  2003 59:2060-2064  DOI:10.1107/s0907444903022261  PMID:14646062
• Willits, D., Zhao, X., Olson, N., Baker, T. S., Zlotnick, A., Johnson, J. E., Douglas, T., Young, M. J.  Effects of the cowpea chlorotic mottle bromovirus beta-hexamer structure on virion assembly  Virology  2003 306:280-288  DOI:10.1016/s0042-6822(02)00054-5
• Lin, T. W., Cavarelli, J., Johnson, J. E.  Evidence for assembly-dependent folding of protein and rna in an icosahedral virus  Virology  2003 314:26-33  DOI:10.1016/s0042-6822(03)00457-4
• Cheung, C. L., Camarero, J. A., Woods, B. W., Lin, T. W., Johnson, J. E., De Yoreo, J. J.  Fabrication of assembled virus nanostructures on templates of chemoselective linkers formed by scanning probe nanolithography  Journal of the American Chemical Society  2003 125:6848-6849  DOI:10.1021/ja034479h
• Smith, J. C., Lee, K. B., Wang, Q., Finn, M. G., Johnson, J. E., Mrksich, M., Mirkin, C. A.  Nanopatterning the chemospecific immobilization of cowpea mosaic virus capsid  Nano Letters  2003 3:883-886  DOI:10.1021/nl025956h
• Liu, H. J., Qu, C. X., Johnson, J. E., Case, D. A.  Pseudo-atomic models of swollen ccmv from cryo-electron microscopy data  Journal of Structural Biology  2003 142:356-363  DOI:10.1016/s1047-8477(03)00028-5
• Heigstrand, C., Wikoff, W. R., Duda, R. L., Hendrix, R. W., Johnson, J. E., Liljas, L.  The refined structure of a protein catenane: The hk97 bacteriophage capsid at 3.44 angstrom resolution  Journal of Molecular Biology  2003 334:885-899  DOI:10.1016/j.jmb.2003.09.035
• Fourme, R., Girard, E., Kahn, R., Ascone, I., Mezouar, M., Dhaussy, A. C., Lin, T., Johnson, J. E.  Using a quasi-parallel x-ray beam of ultrashort wavelength for high-pressure virus crystallography: Implications for standard macromolecular crystallography  Acta Crystallographica Section D-Biological Crystallography  2003 59:1767-1772  DOI:10.1107/s0907444903016287  PMID:14501116
• Johnson, J. E.  Virus particle dynamics  Virus Structure  2003 64:197-218  PMID:13677048
• Damodaran, K. V., Reddy, V. S., Johnson, J. E., Brooks, C. L.  A general method to quantify quasi-equivalence in icosahedral viruses  Journal of Molecular Biology  2002 324:723-737  DOI:10.1016/s0022-2836(02)01138-5
• Chatterji, A., Burns, L. L., Taylor, S. S., Lomonossoff, G. P., Johnson, J. E., Lin, T., Porta, C.  Cowpea mosaic virus: From the presentation of antigenic peptides to the display of active biomaterials  Intervirology  2002 45:362-370  DOI:10.1159/000067929
• Liljas, L., Tate, J., Lin, T., Christian, P., Johnson, J. E.  Evolutionary and taxonomic implications of conserved structural motifs between picornaviruses and insect picorna-like viruses  Archives of Virology  2002 147:59-84  DOI:10.1007/s705-002-8303-1
• Wang, Q., Lin, T. W., Tang, L., Johnson, J. E., Finn, M. G.  Icosahedral virus particles as addressable nanoscale building blocks  Angewandte Chemie - International Edition  2002 41:459-462  DOI:10.1002/1521-3773(20020201)41:3<459::aid-anie459>3.3.co;2-f
• Catz, S. D., Babior, B. M., Johnson, J. L.  Jfc1 is transcriptionally activated by nuclear factor-kappa b and up-regulated by tumour necrosis factor alpha in prostate carcinoma cells  Biochemical Journal  2002 367:791-799  DOI:10.1042/bj20020345
• Naitow, H., Tang, J. H., Canady, M., Wickner, R. B., Johnson, J. E.  L-a virus at 3.4 angstrom resolution reveals particle architecture and mrna decapping mechanism  Nature Structural Biology  2002 9:725-728  DOI:10.1038/nsb844
• Taylor, D. J., Krishna, N. K., Canady, M. A., Schneemann, A., Johnson, J. E.  Large-scale, ph-dependent, quaternary structure changes in an rna virus capsid are reversible in the absence of subunit autoproteolysis  Journal of Virology  2002 76:9972-9980  DOI:10.1128/jvi.76.19.9972-9980.2002
• Wang, Q., Lin, T. W., Johnson, J. E., Finn, M. G.  Natural supramolecular building blocks: Cysteine-added mutants of cowpea mosaic virus  Chemistry & Biology  2002 9:813-819  DOI:10.1016/s1074-5521(02)00166-7
• Wang, Q., Kaltgrad, E., Lin, T. W., Johnson, J. E., Finn, M. G.  Natural supramolecular building blocks: Wild-type cowpea mosaic virus  Chemistry & Biology  2002 9:805-811  DOI:10.1016/s1074-5521(02)00165-5
• Khor, I. W., Lin, T. W., Langedijk, J. P. M., Johnson, J. E., Manchester, M.  Novel strategy for inhibiting viral entry by use of a cellular receptor-plant virus chimera  Journal of Virology  2002 76:4412-4419  DOI:10.1128/jvi.76.9.4412-4419.2002
• Fourme, R., Ascone, I., Kahn, R., Mezouar, M., Bouvier, P., Girard, E., Lin, T. W., Johnson, J. E.  Opening the high-pressure domain beyond 2 kbar to protein and virus crystallography - technical advance  Structure  2002 10:1409-1414  DOI:10.1016/s0969-2126(02)00850-x
• Cingolani, G., Moore, S. D., Prevelige, P. E., Johnson, J. E.  Preliminary crystallographic analysis of the bacteriophage p22 portal protein  Journal of Structural Biology  2002 139:46-54  DOI:10.1016/s1047-8477(02)00512-9
• Da Poian, A. T., Johnson, J. E., Silva, J. L.  Protein-rna interactions and virus stability as probed by the dynamics of tryptophan side chains  Journal of Biological Chemistry  2002 277:47596-47602  DOI:10.1074/jbc.M209174200
• Tang, L., Johnson, J. E.  Structural biology of viruses by the combination of electron cryomicroscopy and x-ray crystallography  Biochemistry  2002 41:11517-11524  DOI:10.1021/bi020170j
• Catz, S. D., Johnson, J. L., Babior, B. M.  The c2a domain of jfc1 binds to 3 '-phosphorylated phosphoinositides and directs plasma membrane association in living cells  Proceedings of the National Academy of Sciences of the United States of America  2002 99:11652-11657  DOI:10.1073/pnas.172382799
• Tang, L., Lin, C. S., Krishna, N. K., Yeager, M., Schneemann, A., Johnson, J. E.  Virus-like particles of a fish nodavirus display a capsid subunit domain organization different from that of insect nodaviruses  Journal of Virology  2002 76:6370-6375  DOI:10.1128/jvi.76.12.6370-6375.2002
• Canady, M. A., Tsuruta, H., Johnson, J. E.  Analysis of rapid, large-scale protein quaternary structural changes: Time-resolved x-ray solution scattering of nudaurelia capensis omega virus (n omega v) maturation  Journal of Molecular Biology  2001 311:803-814  DOI:10.1006/jmbi.2001.4896
• Catz, S. D., Johnson, J. L., Babior, B. M.  Characterization of the nucleotide-binding capacity and the atpase activity of the pips-binding protein jfc1  Proceedings of the National Academy of Sciences of the United States of America  2001 98:11230-11235  DOI:10.1073/pnas.191369598
• Lin, C. S., Lu, M. W., Tang, L., Liu, W. T., Chao, C. B., Lin, C. J., Krishna, N. K., Johnson, J. E., Schneemann, A.  Characterization of virus-like particles assembled in a recombinant baculovirus system expressing the capsid protein of a fish nodavirus  Virology  2001 290:50-58  DOI:10.1006/viro.2001.1157
• Berkowitz, J. K. M., Catz, S. D., Johnson, J. L., Ruedi, J. M., Thon, V., Babior, B. M.  Jfc1, a novel tandem c2 domain-containing protein associated with the leukocyte nadph oxidase  Journal of Biological Chemistry  2001 276:18855-18862
• Naitow, H., Canady, M. A., Lin, T. W., Wickner, R. B., Johnson, J. E.  Purification, crystallization, and preliminary x-ray analysis of l-a: A dsrna yeast virus  Journal of Structural Biology  2001 135:1-7  DOI:10.1006/jsbi.2001.4371
• Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., Gocayne, J. D., Amanatides, P., et al.  The sequence of the human genome  Science  2001 291:1304-1351  DOI:10.1126/science.1058040  PMID:11181995
• Tang, L., Johnson, K. N., Ball, L. A., Lin, T. W., Yeager, M., Johnson, J. E.  The structure of pariacoto virus reveals a dodecahedral cage of duplex rna  Nature Structural Biology  2001 8:77-83
• Catz, S. D., Johnson, J. L.  Transcriptional regulation of bcl-2 by nuclear factor kappa b and its significance in prostate cancer  Oncogene  2001 20:7342-7351  DOI:10.1038/sj.onc.1204926
• Broo, K., Wei, J., Marshall, D., Brown, F., Smith, T. J., Johnson, J. E., Schneemann, A., Siuzdak, G.  Viral capsid mobility: A dynamic conduit for inactivation  Proceedings of the National Academy of Sciences of the United States of America  2001 98:2274-2277  DOI:10.1073/pnas.051598298
• Conway, J. F., Wikoff, W. R., Cheng, N., Duda, R. L., Hendrix, R. W., Johnson, J. E., Steven, A. C.  Virus maturation involving large subunit rotations and local refolding  Science  2001 292:744-748  DOI:10.1126/science.1058069
• Qu, C. X., Liljas, L., Opalka, N., Brugidou, C., Yeager, M., Beachy, R. N., Fauquet, C. M., Johnson, J. E., Lin, T. W.  3d domain swapping modulates the stability of members of an icosahedral virus group  Structure  2000 8:1095-1103  DOI:10.1016/s0969-2126(00)00508-6
• Doerschuk, P. C., Johnson, J. E.  Ab initio reconstruction and experimental design for cryo electron microscopy  IEEE Transactions on Information Theory  2000 46:1714-1729  DOI:10.1109/18.857786
• Howard, M., Jiang, X. S., Stolz, D. B., Hill, W. G., Johnson, J. A., Watkins, S. C., Frizzell, R. A., Bruton, C. M., Robbins, P. D., Weisz, O. A.  Forskolin-induced apical membrane insertion of virally expressed, epitope-tagged cftr in polarized mdck cells  American Journal of Physiology-Cell Physiology  2000 279:C375-C382  PMID:10913004
• Wikoff, W. R., Schildkamp, W., Johnson, J. E.  Increased resolution data from a large unit cell crystal collected at a third-generation synchrotron x-ray source  Acta Crystallographica Section D-Biological Crystallography  2000 56:890-893  DOI:10.1107/s0907444900005941  PMID:10930835
• Taylor, K. M., Lin, T. W., Porta, C., Mosser, A. G., Giesing, H. A., Lomonossoff, G. P., Johnson, J. E.  Influence of three-dimensional structure on the immunogenicity of a peptide expressed on the surface of a plant virus  Journal of Molecular Recognition  2000 13:71-82  DOI:10.1002/(sici)1099-1352(200003/04)13:2<71::aid-jmr489>3.3.co;2-m
• Canady, M. A., Tihova, M., Hanzlik, T. N., Johnson, J. E., Yeager, M.  Large conformational changes in the maturation of a simple rna virus, nudaurelia capensis omega virus (n omega v)  Journal of Molecular Biology  2000 299:573-584  DOI:10.1006/jmbi.2000.3723
• Lata, R., Conway, J. F., Cheng, N. Q., Duda, R. L., Hendrix, R. W., Wikoff, W. R., Johnson, J. E., Tsuruta, H., Steven, A. C.  Maturation dynamics of a viral capsid: Visualization of transitional intermediate states  Cell  2000 100:253-263  DOI:10.1016/s0092-8674(00)81563-9
• Abe, K., Abe, T., Adam, I., Akagi, T., Akimoto, H., Allen, N. J., Ash, W. W., Aston, D., Baird, K. G., Baltay, C., Band, H. R., Barakat, M. B., et al.  Search for charmless hadronic decays of b mesons with the slac sld detector  Physical Review D  2000 62:071101
• Lin, T. W., Clark, A. J., Chen, Z. G., Shanks, M., Dai, J. B., Li, Y., Schmidt, T., Oxelfelt, P., Lomonossoff, G. P., Johnson, J. E.  Structural fingerprinting: Subgrouping of comoviruses by structural studies of red clover mottle virus to 2.4-angstrom resolution and comparisons with other comoviruses  Journal of Virology  2000 74:493-504
• Johnson, J. E., Chiu, V.  Structures of virus and virus-like particles  Current Opinion in Structural Biology  2000 10:229-235  DOI:10.1016/s0959-440x(00)00073-7
• Zheng, Y. B., Doerschuk, P. C., Johnson, J. E.  Symmetry-constrained 3-d interpolation of viral x-ray crystallography data  IEEE Transactions on Signal Processing  2000 48:214-222
• Wikoff, W. R., Liljas, L., Duda, R. L., Tsuruta, H., Hendrix, R. W., Johnson, J. E.  Topologically linked protein rings in the bacteriophage hk97 capsid  Science  2000 289:2129-2133  DOI:10.1126/science.289.5487.2129
• Oliveira, A. C., Gomes, A. M. O., Almeida, F. C. L., Mohana-Borges, R., Valente, A. P., Reddy, V. S., Johnson, J. E., Silva, J. L.  Virus maturation targets the protein capsid to concerted disassembly and unfolding  Journal of Biological Chemistry  2000 275:16037-16043  DOI:10.1074/jbc.M910145199
• Bong, D. T., Steinem, C., Janshoff, A., Johnson, J. E., Ghadiri, M. R.  A highly membrane-active peptide in flock house virus: Implications for the mechanism of nodavirus infection  Chemistry & Biology  1999 6:473-481  DOI:10.1016/s1074-5521(99)80065-9
• Janshoff, A., Bong, D. T., Steinem, C., Johnson, J. E., Ghadiri, M. R.  An animal virus-derived peptide switches membrane morphology: Possible relevance to nodaviral transfection processes  Biochemistry  1999 38:5328-5336  DOI:10.1021/bi982976i
• Wikoff, W. R., Duda, R. L., Hendrix, R. W., Johnson, J. E.  Crystallographic analysis of the dsdna bacteriophage hk97 mature empty capsid  Acta Crystallographica Section D-Biological Crystallography  1999 55:763-771  DOI:10.1107/s0907444998017661  PMID:10089306
• Bothner, B., Schneemann, A., Marshall, D., Reddy, V., Johnson, J. E., Siuzdak, G.  Crystallographically identical virus capsids display different properties in solution  Nature Structural Biology  1999 6:114-116
• Abe, K., Abe, T., Adam, I., Akagi, T., Allen, N. J., Arodzero, A., Ash, W. W., Aston, D., Baird, K. G., Baltay, C., Band, H. R., Barakat, M. B., et al.  Direct measurement of a(b) and a(c) at the z(0) pole using a lepton tag  Physical Review Letters  1999 83:3384-3389  DOI:10.1103/PhysRevLett.83.3384
• Abe, K., Abe, T., Adam, I., Akagi, T., Allen, N. J., Arodzero, A., Ash, W. W., Aston, D., Baird, K. G., Baltay, C., Band, H. R., Barakat, M. B., et al.  Direct measurement of a(b) in z(0) decays using charged kaon tagging  Physical Review Letters  1999 83:1902-1907  DOI:10.1103/PhysRevLett.83.1902
• Taylor, K. M., Porta, C., Lin, T. W., Johnson, J. E., Barker, P. J., Lomonossoff, G. P.  Position-dependent processing of peptides presented on the surface of cowpea mosaic virus  Biological Chemistry  1999 380:387-392  DOI:10.1515/bc.1999.051
• Brennan, F. R., Jones, T. D., Gilleland, L. B., Bellaby, T., Xu, F., North, P. C., Thompson, A., Staczek, J., Lin, T., Johnson, J. E., Hamilton, W. D. O., Gilleland, H. E.  Pseudomonas aeruginosa outer-membrane protein f epitopes are highly immunogenic in mice when expressed an a plant virus  Microbiology-SGM  1999 145:211-220
• Krol, M. A., Olson, N. H., Tate, J., Johnson, J. E., Baker, T. S., Ahlquist, P.  Rna-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein  Proceedings of the National Academy of Sciences of the United States of America  1999 96:13650-13655  DOI:10.1073/pnas.96.24.13650
• Abe, K., Abe, T., Adam, I., Akimoto, H., Akagi, T., Allen, N. J., Ash, W. W., Aston, D., Baird, K. G., Baltay, C., Band, H. R., Barakat, M. B., et al.  Study of the structure of e(+)e(-)-> b(b)over-bar-g events and first limits on the anomalous chromomagnetic coupling of the b quark  Physical Review D  1999 60:092002
• Rapaport, D. C., Johnson, J. E., Skolnick, J.  Supramolecular self-assembly: Molecular dynamics modeling of polyhedral shell formation  Computer Physics Communications  1999 121:231-235  DOI:10.1016/s0010-4655(99)00319-7
• Tate, J., Liljas, L., Scotti, P., Christian, P., Lin, T. W., Johnson, J. E.  The crystal structure of cricket paralysis virus: The first view of a new virus family  Nature Structural Biology  1999 6:765-774
• Lin, T. W., Chen, Z. G., Usha, R., Stauffacher, C. V., Dai, J. B., Schmidt, T., Johnson, J. E.  The refined crystal structure of cowpea mosaic virus at 2.8 angstrom resolution  Virology  1999 265:20-34  DOI:10.1006/viro.1999.0038
• Wikoff, W. R., Johnson, J. E.  Virus assembly: Imaging a molecular machine  Current Biology  1999 9:R296-R300  DOI:10.1016/s0960-9822(99)80183-3
• Johnson, J. E., Reddy, V. S.  Biggest virus molecular structure yet!  Nature Structural Biology  1998 5:849-854  DOI:10.1038/2288
• Fox, J. M., Wang, G. J., Speir, J. A., Olson, N. H., Johnson, J. E., Baker, T. S., Young, M. J.  Comparison of the native ccmv virion with in vitro assembled ccmw virions by cryoelectron microscopy and image reconstruction  Virology  1998 244:212-218  DOI:10.1006/viro.1998.9107
• Wikoff, W. R., Duda, R. L., Hendrix, R. W., Johnson, J. E.  Crystallization and preliminary x-ray analysis of the dsdna bacteriophage hk97 mature empty capsid  Virology  1998 243:113-118  DOI:10.1006/viro.1998.9040
• Reddy, V. S., Giesing, H. A., Morton, R. T., Kumar, A., Post, C. B., Brooks, C. L., Johnson, J. E.  Energetics of quasiequivalence: Computational analysis of protein-protein interactions in icosahedral viruses  Biophysical Journal  1998 74:546-558
• Bothner, B., Dong, X. F., Bibbs, L., Johnson, J. E., Siuzdak, G.  Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry  Journal of Biological Chemistry  1998 273:673-676  DOI:10.1074/jbc.273.2.673
• Tsuruta, H., Reddy, V. S., Wikoff, W. R., Johnson, J. E.  Imaging rna and dynamic protein segments with low-resolution virus crystallography: Experimental design, data processing and implications of electron density maps  Journal of Molecular Biology  1998 284:1439-1452  DOI:10.1006/jmbi.1998.2231
• Johnson, J. E., Wikoff, W. R.  Macromolecular assembly: Chainmail stabilization of a viral capsid  Current Biology  1998 8:R914-R917  DOI:10.1016/s0960-9822(98)00008-6
• Natarajan, P., Johnson, J. E.  Molecular packing in virus crystals: Geometry, chemistry, and biology  Journal of Structural Biology  1998 121:295-305  DOI:10.1006/jsbi.1998.3982
• Dong, X. F., Natarajan, P., Tihova, M., Johnson, J. E., Schneemann, A.  Particle polymorphism caused by deletion of a peptide molecular switch in a quasiequivalent icosahedral virus  Journal of Virology  1998 72:6024-6033
• Munshi, S., Liljas, L., Johnson, J. E.  Structure determination of naudaurelia capensis omega virus  Acta Crystallographica Section D-Biological Crystallography  1998 54:1295-1305  DOI:10.1107/s0907444998004454  PMID:10089506
• Schneemann, A., Reddy, V., Johnson, J. E.  The structure and function of nodavirus particles: A paradigm for understanding chemical biology  Advances in Virus Research  1998 50:381-446  DOI:10.1016/s0065-3527(08)60812-x
• Chandrasekar, V., Johnson, J. E.  The structure of tobacco ringspot virus: A link in the evolution of icosahedral capsids in the picornavirus superfamily  Structure  1998 6:157-171  DOI:10.1016/s0969-2126(98)00018-5
• Bailey, M. J., Schulten, K., Johnson, J. E.  The use of solid physical models for the study of macromolecular assembly  Current Opinion in Structural Biology  1998 8:202-208  DOI:10.1016/s0959-440x(98)80039-0
• Chandrasekar, V., Munshi, S., Johnson, J. E.  Crystallization and preliminary x-ray analysis of tobacco ringspot virus  Acta Crystallographica Section D-Biological Crystallography  1997 53:125-128  DOI:10.1107/S0907444996011547  PMID:15299983
• Gaspar, L. P., Johnson, J. E., Silva, J. L., DaPoian, A. T.  Partially folded states of the capsid protein of cowpea severe mosaic virus in the disassembly pathway  Journal of Molecular Biology  1997 273:456-466  DOI:10.1006/jmbi.1997.1299
• Johnson, J. E., Speir, J. A.  Quasi-equivalent viruses: A paradigm for protein assemblies  Journal of Molecular Biology  1997 269:665-675  DOI:10.1006/jmbi.1997.1068
• Zlotnick, A., Natarajan, P., Munshi, S., Johnson, J. E.  Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 a resolution from pseudo-r32 (monoclinic) crystals  Acta Crystallographica Section D-Biological Crystallography  1997 53:738-746  DOI:10.1107/s0907444997007427  PMID:15299863
• Flasinski, S., Dzianott, A., Speir, J. A., Johnson, J. E., Bujarski, J. J.  Structure-based rationale for the rescue of systemic movement of brome mosaic virus by spontaneous second-site mutations in the coat protein gene  Journal of Virology  1997 71:2500-2504
• Kumar, A., Reddy, V. S., Yusibov, V., Chipman, P. R., Hata, Y., Fita, I., Fukuyama, K., Rossmann, M. G., LoeschFries, L. S., Baker, T. S., Johnson, J. E.  The structure of alfalfa mosaic virus capsid protein assembled as a t=1 icosahedral particle at 4.0-angstrom resolution  Journal of Virology  1997 71:7911-7916
• Wikoff, W. R., Tsai, C. J., Wang, G. J., Baker, T. S., Johnson, J. E.  The structure of cucumber mosaic virus: Cryoelectron microscopy, x-ray crystallography, and sequence analysis  Virology  1997 232:91-97  DOI:10.1006/viro.1997.8543
• Johnson, J. E.  Functional implications of protein-protein interactions in icosahedral viruses  Proceedings of the National Academy of Sciences of the United States of America  1996 93:27-33  DOI:10.1073/pnas.93.1.27
• Baker, T. S., Johnson, J. E.  Low resolution meets high: Towards a resolution continuum from cells to atoms  Current Opinion in Structural Biology  1996 6:585-594  DOI:10.1016/s0959-440x(96)80023-6
• Yusibov, V., Kumar, A., North, A., Johnson, J. E., LoeschFries, L. S.  Purification, characterization, assembly and crystallization of assembled alfalfa mosaic virus coat protein expressed in escherichia coli  Journal of General Virology  1996 77:567-573  DOI:10.1099/0022-1317-77-4-567
• Lin, T. W., Porta, C., Lomonossoff, G., Johnson, J. E.  Structure-based design of peptide presentation on a viral surface: The crystal structure of a plant/animal virus chimera at 2.8 angstrom resolution  Folding & Design  1996 1:179-187  DOI:10.1016/s1359-0278(96)00030-2
• Munshi, S., Liljas, L., Cavarelli, J., Bomu, W., McKinney, B., Reddy, V., Johnson, J. E.  The 2.8 angstrom structure of a t=4 animal virus and its implications for membrane translocation of rna  Journal of Molecular Biology  1996 261:1-10  DOI:10.1006/jmbi.1996.0437
• Porta, C., Spall, V. E., Lin, T. W., Johnson, J. E., Lomonossoff, G. P.  The development of cowpea mosaic virus as a potential source of novel vaccines  Intervirology  1996 39:79-84
• Lomonossoff, G. P., Johnson, J. E.  Use of macromolecular assemblies as expression systems for peptides and synthetic vaccines  Current Opinion in Structural Biology  1996 6:176-182  DOI:10.1016/s0959-440x(96)80072-8
• Agrawal, D. K., Johnson, J. E.  Assembly of the t=4 nudaurelia capensis omega virus capsid protein, posttranslational cleavage, and specific encapsidation of its messenger-rna in a baculovirus expression system  Virology  1995 207:89-97  DOI:10.1006/viro.1995.1054
• Kiyatkin, A. B., Natarajan, P., Munshi, S., Minor, W., Johnson, J. E., Low, P. S.  Crystallization and preliminary-x-ray analysis of the cytoplasmic domain of human erythrocyte band-3  Proteins-Structure Function and Genetics  1995 22:293-297  DOI:10.1002/prot.340220312
• Zheng, Y., Doerschuk, P. C., Johnson, J. E.  Determination of 3-dimensional low-resolution viral structure from solution x-ray-scattering data  Biophysical Journal  1995 69:619-639
• Lomonossoff, G., Johnson, J. E.  Eukaryotic viral expression systems for polypeptides  Seminars in Virology  1995 6:257-267  DOI:10.1006/smvy.1995.0031
• Muckelbauer, J. K., Kremer, M., Minor, I., Tong, L., Zlotnick, A., Johnson, J. E., Rossmann, M. G.  Structure determination of coxsackievirus b3 to 3.5 a resolution  Acta Crystallographica Section D-Biological Crystallography  1995 51:871-887  DOI:10.1107/s0907444995002253  PMID:15299757
• Speir, J. A., Munshi, S., Wang, G. J., Baker, T. S., Johnson, J. E.  Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by x-ray crystallography and cryoelectron microscopy  Structure  1995 3:63-78  DOI:10.1016/s0969-2126(01)00135-6
• Sehnke, P. C., Johnson, J. E.  A chromatographic analysis of capsid protein isolated from alfalfa mosaic-virus - zinc-binding and proteolysis cause distinct charge heterogeneity  Virology  1994 204:843-846  DOI:10.1006/viro.1994.1605
• Zlotnick, A., Reddy, V. S., Dasgupta, R., Schneemann, A., Ray, W. J., Rueckert, R. R., Johnson, J. E.  Capsid assembly in a family of animal viruses primes an autoproteolytic maturation that depends on a single aspartic-acid residue  Journal of Biological Chemistry  1994 269:13680-13684
• Johnson, J. E., Munshi, S., Liljas, L., Agrawal, D., Olson, N. H., Reddy, V., Fisher, A., McKinney, B., Schmidt, T., Baker, T. S.  Comparative-studies of t=3 and t=4 icosahedral rna insect viruses  Archives of Virology  1994 497-512
• Porta, C., Spall, V. E., Loveland, J., Johnson, J. E., Barker, P. J., Lomonossoff, G. P.  Development of cowpea mosaic-virus as a high-yielding system for the presentation of foreign peptides  Virology  1994 202:949-955  DOI:10.1006/viro.1994.1417
• Dapoian, A. T., Johnson, J. E., Silva, J. L.  Differences in pressure stability of the 3 components of cowpea mosaic-virus - implications for virus assembly and disassembly  Biochemistry  1994 33:8339-8346  DOI:10.1021/bi00193a022
• Porta, C., Wang, G. J., Cheng, H., Chen, Z. G., Baker, T. S., Johnson, J. E.  Direct imaging of interactions between an icosahedral virus and conjugate f-ab fragments by cryoelectron microscopy and x-ray crystallography  Virology  1994 204:777-788  DOI:10.1006/viro.1994.1593
• Cheng, R. H., Reddy, V. S., Olson, N. H., Fisher, A. J., Baker, T. S., Johnson, J. E.  Functional implications of quasi-equivalence in a t=3 icosahedral animal virus established by cryoelectron microscopy and x-ray crystallography  Structure  1994 2:271-282
• McKinney, B. R., Agrawal, D., Fisher, A. J., Johnson, J. E., Schneemann, A., Rueckert, R. R.  Production and crystallization of virus-like particles assembled in a heterologous protein expression system  Acta Crystallographica Section D-Biological Crystallography  1994 50:351-354  DOI:10.1107/s090744499400123x  PMID:15299383
• Fox, J. M., Johnson, J. E., Young, M. J.  Rna/protein interactions in icosahedral virus assembly  Seminars in Virology  1994 5:51-60  DOI:10.1006/smvy.1994.1006
• Wery, J. P., Reddy, V. S., Hosur, M. V., Johnson, J. E.  The refined 3-dimensional structure of an insect virus at 2-center-dot-8-angstrom resolution  Journal of Molecular Biology  1994 235:565-586  DOI:10.1006/jmbi.1994.1014
• Zlotnick, A., McKinney, B. R., Munshi, S., Bibler, J., Rossmann, M. G., Johnson, J. E.  A monoclinic crystal with r32 pseudo-symmetry: A preliminary report of nodamura virus structure determination  Acta Crystallographica Section D-Biological Crystallography  1993 49:580-587  DOI:10.1107/s0907444993007498  PMID:15299495
• Sehnke, P. C., Johnson, J. E.  Crystallization and preliminary-x-ray characterization of tobacco streak virus and a proteolytically modified form of the capsid protein  Virology  1993 196:328-331  DOI:10.1006/viro.1993.1483
• Fisher, A. J., McKinney, B. R., Schneemann, A., Rueckert, R. R., Johnson, J. E.  Crystallization of virus-like particles assembled from flock house virus coat protein expressed in a baculovirus system  Journal of Virology  1993 67:2950-2953
• Usha, R., Rohll, J. B., Spall, V. E., Shanks, M., Maule, A. J., Johnson, J. E., Lomonossoff, G. P.  Expression of an animal virus antigenic site on the surface of a plant-virus particle  Virology  1993 197:366-374  DOI:10.1006/viro.1993.1598
• Speir, J. A., Munshi, S., Baker, T. S., Johnson, J. E.  Preliminary-x-ray data-analysis of crystalline cowpea chlorotic mottle virus  Virology  1993 193:234-241  DOI:10.1006/viro.1993.1119
• Schneemann, A., Dasgupta, R., Johnson, J. E., Rueckert, R. R.  Use of recombinant baculoviruses in synthesis of morphologically distinct virus-like particles of flock house virus, a nodavirus  Journal of Virology  1993 67:2756-2763
• Beck, M. A., Tracy, S., Coller, B. A., Chapman, N. M., Hufnagel, G., Johnson, J. E., Lomonossoff, G.  Comoviruses and enteroviruses share a t-cell epitope  Virology  1992 186:238-246  DOI:10.1016/0042-6822(92)90078-4
• Fisher, A. J., McKinney, B. R., Wery, J. P., Johnson, J. E.  Crystallization and preliminary data analysis of flock house virus  Acta Crystallographica Section B-Structural Crystallography and Crystal Chemistry  1992 48:515-520  DOI:10.1107/s0108768192000053  PMID:1418822
• Wang, G. J., Porta, C., Chen, Z. G., Baker, T. S., Johnson, J. E.  Identification of a fab interaction footprint site on an icosahedral virus by cryoelectron microscopy and x-ray crystallography  Nature  1992 355:275-278  DOI:10.1038/355275a0
• Agrawal, D. K., Johnson, J. E.  Sequence and analysis of the capsid protein of nudaurelia-capensis omega-virus, an insect virus with t=4 icosahedral symmetry  Virology  1992 190:806-814  DOI:10.1016/0042-6822(92)90918-f
• Li, T. S., Chen, Z. G., Johnson, J. E., Thomas, G. J.  Studies of virus structure by laser raman-spectroscopy .35. Conformations, interactions, and thermostabilities of rna and proteins in bean pod mottle virus - investigation of solution and crystal-structures by laser raman-spectroscopy  Biochemistry  1992 31:6673-6682  DOI:10.1021/bi00144a006
• Giroir, B. P., Johnson, J. H., Brown, T., Allen, G. L., Beutler, B.  The tissue distribution of tumor-necrosis-factor biosynthesis during endotoxemia  Journal of Clinical Investigation  1992 90:693-698  DOI:10.1172/jci115939
• Lee, D. K., Evans, R. K., Blanco, J., Gottesfeld, J., Johnson, J. D.  Contacts between 5s DNA and xenopus tfiiia identified using 5-azido-2'-deoxyuridine-substituted DNA  Journal of Biological Chemistry  1991 266:16478-16484
• Cavarelli, J., Bomu, W., Liljas, L., Kim, S., Minor, W., Munshi, S., Muchmore, S., Schmidt, T., Johnson, J. E., Hendry, D. A.  Crystallization and preliminary structure analysis of an insect virus with t=4 quasi-symmetry: Nudaurelia capensis [omega] virus  Acta Crystallographica Section B-Structural Science  1991 47:23-29  DOI:10.1107/s0108768190009326
• Lomonossoff, G. P., Johnson, J. E.  The synthesis and structure of comovirus capsids  Progress in Biophysics & Molecular Biology  1991 55:107-137  DOI:10.1016/0079-6107(91)90003-b
• Kaesberg, P., Dasgupta, R., Sgro, J. Y., Wery, J. P., Selling, B. H., Hosur, M. V., Johnson, J. E.  Structural homology among 4 nodaviruses as deduced by sequencing and x-ray crystallography  Journal of Molecular Biology  1990 214:423-435  DOI:10.1016/0022-2836(90)90191-n
• Li, T. S., Chen, Z. G., Johnson, J. E., Thomas, G. J.  Studies of virus structure by laser raman-spectroscopy .26. Structural studies of bean pod mottle virus, capsid, and rna in crystal and solution states by laser raman-spectroscopy  Biochemistry  1990 29:5018-5026  DOI:10.1021/bi00473a004
• Olson, N. H., Baker, T. S., Johnson, J. E., Hendry, D. A.  The 3-dimensional structure of frozen-hydrated nudaurelia-capensis beta-virus, a t = 4 insect virus  Journal of Structural Biology  1990 105:111-122  DOI:10.1016/1047-8477(90)90105-l
• Sehnke, P. C., Mason, A. M., Hood, S. J., Lister, R. M., Johnson, J. E.  A zinc-finger-type binding domain in tobacco streak virus coat protein  Virology  1989 168:48-56  DOI:10.1016/0042-6822(89)90402-9
• Rossmann, M. G., Johnson, J. E.  Icosahedral rna virus structure  Annual Review of Biochemistry  1989 58:533-573  DOI:10.1146/annurev.biochem.58.1.533
• Wery, J. P., Johnson, J. E.  Molecular-biology at atomic resolution. The structure of an insect virus and its functional implications  Analytical Chemistry  1989 61:1341A-1350A  DOI:10.1021/ac00198a742
• Chen, Z. G., Stauffacher, C., Li, Y. G., Schmidt, T., Wu, B. M., Kamer, G., Shanks, M., Lomonossoff, G., Johnson, J. E.  Protein-rna interactions in an icosahedral virus at 3.0-a resolution  Science  1989 245:154-159  DOI:10.1126/science.2749253
• Sehnke, P. C., Harrington, M., Hosur, M. V., Li, Y., Usha, R., Tucker, R. C., Bomu, W., Stauffacher, C. V., Johnson, J. E.  Crystallization of viruses and virus proteins  Journal of Crystal Growth  1988 90:222-230  DOI:10.1016/0022-0248(88)90319-3
• Dockbregeon, A. C., Chevrier, B., Podjarny, A., Moras, D., Debear, J. S., Gough, G. R., Gilham, P. T., Johnson, J. E.  High-resolution structure of the rna duplex u(u-a)6a 2  Nature  1988 335:375-378  DOI:10.1038/335375a0
• Pidgeon, C., McNeely, S., Schmidt, T., Johnson, J. E.  Multilayered vesicles prepared by reverse-phase evaporation - liposome structure and optimum solute entrapment  Biochemistry  1987 26:17-29  DOI:10.1021/bi00375a004
• Hosur, M. V., Schmidt, T., Tucker, R. C., Johnson, J. E., Gallagher, T. M., Selling, B. H., Rueckert, R. R.  Structure of an insect virus at 3.0-a resolution  Proteins-Structure Function and Genetics  1987 2:167-176  DOI:10.1002/prot.340020302
• Arnold, E., Vriend, G., Luo, M., Griffith, J. P., Kamer, G., Erickson, J. W., Johnson, J. E., Rossmann, M. G.  The structure determination of a common cold virus, human rhinovirus-14  Acta Crystallographica Section A  1987 43:346-361  DOI:10.1107/s0108767387099306
• Rossmann, M. G., Arnold, E., Erickson, J. W., Frankenberger, E. A., Griffith, J. P., Hecht, H. J., Johnson, J. E., Kamer, G., Luo, M., Vriend, G., Mosser, A. G., Palmenberg, A. C., et al.  The structure of a human common cold virus (rhinovirus 14) and its evolutionary relations to other viruses  Chemica Scripta  1986 26B:313-323
• Virudachalam, R., Harrington, M., Johnson, J. E., Markley, J. L.  H-1, c-13, and p-31 nuclear magnetic-resonance studies of cowpea mosaic-virus - detection and exchange of polyamines and dynamics of the rna  Virology  1985 141:43-50  DOI:10.1016/0042-6822(85)90181-3
• Rossmann, M. G., Arnold, E., Erickson, J. W., Frankenberger, E. A., Griffith, J. P., Hecht, H. J., Johnson, J. E., Kamer, G., Luo, M., Mosser, A. G., Rueckert, R. R., Sherry, B., et al.  Structure of a human common cold virus and functional-relationship to other picornaviruses  Nature  1985 317:145-153  DOI:10.1038/317145a0
• Johnson, J. P., Moore, J., Austin, H. A., Balow, J. E., Antonovych, T. T., Wilson, C. B.  Therapy of anti-glomerular basement-membrane antibody disease - analysis of prognostic-significance of clinical, pathologic and treatment factors  Medicine  1985 64:219-227
• Hosur, M. V., Schmidt, T., Tucker, R. C., Johnson, J. E., Selling, B. H., Rueckert, R. R.  Black beetle virus - crystallization and particle symmetry  Virology  1984 133:119-127  DOI:10.1016/0042-6822(84)90430-6
• Usha, R., Johnson, J. E., Moras, D., Thierry, J. C., Fourme, R., Kahn, R.  Macromolecular crystallography with synchrotron radiation - collection and processing of data from crystals with a very large unit-cell  Journal of Applied Crystallography  1984 17:147-153  DOI:10.1107/s0021889884011213
• Fukuyama, K., Abdelmeguid, S. S., Johnson, J. E., Rossmann, M. G.  Structure of a t=1 aggregate of alfalfa mosaic-virus coat protein seen at 4.5-a resolution  Journal of Molecular Biology  1983 167:873-890  DOI:10.1016/s0022-2836(83)80116-8
• Schmidt, T., Johnson, J. E., Phillips, W. E.  The spherically averaged structures of cowpea mosaic-virus components by x-ray solution scattering  Virology  1983 127:65-73  DOI:10.1016/0042-6822(83)90371-9
• Abadzapatero, C., Abdelmeguid, S. S., Johnson, J. E., Leslie, A. G. W., Rayment, I., Rossmann, M. G., Suck, D., Tsukihara, T.  A description of techniques used in the structure determination of southern bean mosaic-virus at 2.8 a resolution  Acta Crystallographica Section B-Structural Science  1981 37:2002-2018  DOI:10.1107/s0567740881007863
• Johnson, J. E., Hollingshead, C.  Crystallographic studies of cowpea mosaic-virus by electron-microscopy and x-ray-diffraction  Journal of Ultrastructure Research  1981 74:223-231  DOI:10.1016/s0022-5320(81)80080-9
• White, J. M., Johnson, J. E.  Crystalline cowpea mosaic-virus  Virology  1980 101:319-324  DOI:10.1016/0042-6822(80)90513-9
• Murthy, M. R. N., Garavito, R. M., Johnson, J. E., Rossmann, M. G.  Structure of lobster apo-d-glyceraldehyde-3-phosphate dehydrogenase at 3.0 a resolution  Journal of Molecular Biology  1980 138:859-872  DOI:10.1016/0022-2836(80)90069-8
• Abadzapatero, C., Abdelmeguid, S. S., Johnson, J. E., Leslie, A. G. W., Rayment, I., Rossmann, M. G., Suck, D., Tsukihara, T.  Structure of southern bean mosaic-virus at 2.8-a resolution  Nature  1980 286:33-39  DOI:10.1038/286033a0
• Briggs, W. A., Johnson, J. P., Teichman, S., Yeager, H. C., Wilson, C. B.  Anti-glomerular basement-membrane antibody-mediated glomerulonephritis and goodpastures-syndrome  Medicine  1979 58:348-361
• Rayment, I., Johnson, J. E., Rossmann, M. G.  Metal-free southern bean mosaic-virus crystals  Journal of Biological Chemistry  1979 254:5243-5245
• Rayment, I., Johnson, J. E., Suck, D., Akimoto, T., Rossmann, M. G., Lonbergholm, K., Korant, B. D.  11 a-resolution electron-density map of southern bean mosaic-virus  Acta Crystallographica Section B-Structural Science  1978 34:567-578  DOI:10.1107/s0567740878003556
• Johnson, J. P., Whitman, W., Briggs, W. A., Wilson, C. B.  Plasmapheresis and immunosuppressive agents in anti-basement membrane antibody-induced goodpastures syndrome  American Journal of Medicine  1978 64:354-359  DOI:10.1016/0002-9343(78)90065-7
• Suck, D., Rayment, I., Johnson, J. E., Rossmann, M. G.  Structure of southern bean mosaic-virus at 5 a resolution  Virology  1978 85:187-197  DOI:10.1016/0042-6822(78)90423-3
• Argos, P., Rossmann, M. G., Johnson, J. E.  4-helical super-secondary structure  Biochemical and Biophysical Research Communications  1977 75:83-86  DOI:10.1016/0006-291x(77)91292-x
• Rayment, I., Argos, P., Johnson, J. E.  Crystalline cowpea chlorotic mottle virus  Journal of Ultrastructure Research  1977 61:240-242  DOI:10.1016/s0022-5320(77)80091-9
• Rayment, I., Johnson, J. E., Suck, D.  Method for preventing crystal slippage in macromolecular crystallography  Journal of Applied Crystallography  1977 10:365-365  DOI:10.1107/s0021889877013703
• Vaughan, J. H., Chihara, T., Moore, T. L., Robbins, D. L., Tanimoto, K., Johnson, J. S., McMillan, R.  Rheumatoid factor-producing cells detected by direct hemolytic plaque assay  Journal of Clinical Investigation  1976 58:933-941  DOI:10.1172/jci108546
• Johnson, J. E., Akimoto, T., Suck, D., Rayment, I., Rossmann, M. G.  Structure of southern bean mosaic-virus at 22.5-a resolution  Virology  1976 75:394-400  DOI:10.1016/0042-6822(76)90038-6
• Akimoto, T., Wagner, M. A., Johnson, J. E., Rossmann, M. G.  Packing of southern bean mosaic-virus in various crystal cells  Journal of Ultrastructure Research  1975 53:306-318  DOI:10.1016/s0022-5320(75)80032-3
• Johnson, J. E., Argos, P., Rossmann, M. G.  Rotation function studies of southern bean mosaic-virus at 22-a resolution  Acta Crystallographica Section B-Structural Science  1975 31:2577-2583  DOI:10.1107/s0567740875008242
• Johnson, J. E., Rossmann, M. G., Smiley, I. E., Wagner, M. A.  Single-crystal x-ray-diffraction studies of southern bean mosaic-virus  Journal of Ultrastructure Research  1974 46:441-451  DOI:10.1016/s0022-5320(74)90066-5
• Johnson, J. E., Jacobson, R. A.  Crystal and molecular-structure of di iodobis-(2,2'-bipyridylamine)-copper(ii) iodide perchlorate  Journal of the Chemical Society-Dalton Transactions  1973 580-584  DOI:10.1039/dt9730000580
• Johnson, J. E., Jacobson, R. A.  Crystal and molecular-structure of di-(2-pyridyl)amine  Acta Crystallographica Section B-Structural Science  1973 B 29:1669-1674  DOI:10.1107/s0567740873005236